Vocar.0025s0103.1 (32898387)

Aliases : 32898387

Description : RQC domain; DEAD/DEAH box helicase domain; Helicase, C-terminal; ATP-dependent DNA helicase RecQ, zinc-binding domain [Interproscan].

Gene families : OG_01_0000107 (OrthoFinder) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0025s0103.1
Cluster	HCCA: Cluster_140

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000615.26	tig00000615_g2555.t1	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cpa\|evm.model.tig00020961.28	tig00020961_g16648.t1	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cre03.g178950	30787878	ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana	0.02	OrthoFinder
Cre16.g673393	30776903	ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana	0.03	OrthoFinder
Sro9_g007280.1	Contig4120.g31496	Probable Werner syndrome ATP-dependent helicase homolog 1	0.02	OrthoFinder
XM_002502498.1	MICPUN_50295, 50295	Helicase, C-terminal; DEAD/DEAH box helicase domain...	0.02	OrthoFinder
XM_003055181.1	MicpuC2_12297, 12297	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.03	OrthoFinder
XM_003062439.1	MicpuC2_29315, 29315	Helicase, C-terminal; ATP-dependent DNA helicase RecQ,...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003678	DNA helicase activity	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006281	DNA repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
MF	GO:0008094	ATPase, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016887	ATPase	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043138	3'-5' DNA helicase activity	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003916	DNA topoisomerase activity	IEP	Enrichment
MF	GO:0005096	GTPase activator activity	IEP	Enrichment
CC	GO:0005643	nuclear pore	IEP	Enrichment
CC	GO:0005694	chromosome	IEP	Enrichment
BP	GO:0006265	DNA topological change	IEP	Enrichment
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Enrichment
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Enrichment
BP	GO:0006913	nucleocytoplasmic transport	IEP	Enrichment
MF	GO:0008047	enzyme activator activity	IEP	Enrichment
BP	GO:0016192	vesicle-mediated transport	IEP	Enrichment
MF	GO:0017056	structural constituent of nuclear pore	IEP	Enrichment
MF	GO:0030695	GTPase regulator activity	IEP	Enrichment
MF	GO:0033925	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	IEP	Enrichment
CC	GO:0035658	Mon1-Ccz1 complex	IEP	Enrichment
BP	GO:0051169	nuclear transport	IEP	Enrichment
BP	GO:0051276	chromosome organization	IEP	Enrichment
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Enrichment
BP	GO:0071103	DNA conformation change	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR032284	RecQ_Zn-bd	597	667
IPR001650	Helicase_C	481	585
IPR011545	DEAD/DEAH_box_helicase_dom	262	429
IPR018982	RQC_domain	676	792

External Links

No external refs found!

Vocar.0025s0103.1 (32898387)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation