Vocar.0024s0156.1 (32890529)


Aliases : 32890529

Description : Ribosomal protein L40e; Ubiquitin-like domain [Interproscan].


Gene families : OG_01_0000054 (OrthoFinder) Phylogenetic Tree(s): OG0000054_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0024s0156.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.50 tig00022075_g23611.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder
Cre06.g273600 30779902, RPS27a Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 OrthoFinder
Cz09g22150.t1 No alias Ribosomal protein S27a [Interproscan]. 0.09 OrthoFinder
Cz11g28020.t1 No alias Ubiquitin-like domain [Interproscan]. 0.02 OrthoFinder
Cz13g16210.t1 No alias Ubiquitin-like domain [Interproscan]. 0.05 OrthoFinder
Dusal.0222s00011.1 33201848 Ribosomal protein S27a; Ubiquitin-like domain [Interproscan]. 0.06 OrthoFinder
Dusal.0519s00002.1 33200370 Ubiquitin-like domain [Interproscan]. 0.02 OrthoFinder
Dusal.0814s00004.1 33191920 Ubiquitin-associated domain; Ubiquitin-like domain... 0.03 OrthoFinder
EOD06802 No alias Ubiquitin-like domain [Interproscan]. 0.01 OrthoFinder
EOD24536 No alias Ribosomal protein L41; Ubiquitin-like domain [Interproscan]. 0.02 OrthoFinder
EOD32212 No alias Ubiquitin-like domain; Ribosomal protein S27a [Interproscan]. 0.09 OrthoFinder
EOD34096 No alias Ribosomal protein L41; Ubiquitin-like domain [Interproscan]. 0.02 OrthoFinder
OT_07G00910.1 No alias Ubiquitin-like domain; Ribosomal protein S27a [Interproscan]. 0.05 OrthoFinder
OT_08G01740.1 No alias Ribosomal protein L40e; Ubiquitin-like domain [Interproscan]. 0.05 OrthoFinder
PTI_07G02070.1 No alias Ubiquitin-like domain; Ribosomal protein S27a [Interproscan]. 0.08 OrthoFinder
Sro305_g112730.1 Contig560.g7114 Polyubiquitin (Fragment) 0.13 OrthoFinder
Sro490_g153470.1 Contig328.g4367 Polyubiquitin (Fragment) 0.12 OrthoFinder
TP05G02210.1 No alias Ubiquitin-like domain; Ribosomal protein S27a [Interproscan]. 0.12 OrthoFinder
XM_002501154.1 MICPUN_90428, 90428 Ribosomal protein S27a; Ubiquitin-like domain [Interproscan]. 0.11 OrthoFinder
XM_002503017.1 MICPUN_82590, 82590 Ribosomal protein L40e; Ubiquitin-like domain [Interproscan]. 0.06 OrthoFinder
XM_002503936.1 MICPUN_60151, 60151 Ubiquitin-like domain [Interproscan]. 0.02 OrthoFinder
XM_003054911.1 MicpuC2_50207, 50207 Ubiquitin-like domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01002296.1_cds_GFH23539.1_18016 HaLaN_21164, GFH23539 Ubiquitin-60S ribosomal L40 0.01 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60289.1_4387 PRW60289 Ubiquitin-40S ribosomal S27a 0.04 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56465.1_9834 PRW56465 Ubiquitin-60S ribosomal L40 0.06 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497057.1_786 KAA8497057 Ubiquitin-like protein 1-40S ribosomal protein S27a 0.03 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493558.1_4320 KAA8493558 Ubiquitin-60S ribosomal protein L40-2 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IEP Enrichment
CC GO:0005743 mitochondrial inner membrane IEP Enrichment
CC GO:0005750 mitochondrial respiratory chain complex III IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
BP GO:0006091 generation of precursor metabolites and energy IEP Enrichment
BP GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
BP GO:0006487 protein N-linked glycosylation IEP Enrichment
BP GO:0007021 tubulin complex assembly IEP Enrichment
BP GO:0007023 post-chaperonin tubulin folding pathway IEP Enrichment
CC GO:0008250 oligosaccharyltransferase complex IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
BP GO:0009060 aerobic respiration IEP Enrichment
BP GO:0015980 energy derivation by oxidation of organic compounds IEP Enrichment
BP GO:0019646 aerobic electron transport chain IEP Enrichment
CC GO:0019866 organelle inner membrane IEP Enrichment
BP GO:0022900 electron transport chain IEP Enrichment
BP GO:0022904 respiratory electron transport chain IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
CC GO:0045275 respiratory chain complex III IEP Enrichment
BP GO:0045333 cellular respiration IEP Enrichment
MF GO:0048487 beta-tubulin binding IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098800 inner mitochondrial membrane protein complex IEP Enrichment
CC GO:0098803 respiratory chain complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 3 74
IPR001975 Ribosomal_L40e 78 127
No external refs found!