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  5. Vocar.0023s0208.1

Vocar.0023s0208.1 (32883266)


Aliases : 32883266

Description : DNA polymerase, Y-family, little finger domain; UmuC domain [Interproscan].


Gene families : OG_01_0000380 (OrthoFinder) Phylogenetic Tree(s): OG0000380_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0023s0208.1
Cluster HCCA: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_56939 56939 DNA polymerase, Y-family, little finger domain; UmuC... 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58738.1_7493 PRW58738 DNA polymerase eta isoform A 0.04 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58740.1_7494 PRW58740 DNA polymerase eta isoform B 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495432.1_1430 KAA8495432 DNA polymerase eta 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0004000 adenosine deaminase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
MF GO:0019239 deaminase activity IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
InterPro domains Description Start Stop
IPR001126 UmuC 13 329
IPR017961 DNA_pol_Y-fam_little_finger 412 529
No external refs found!