Vocar.0023s0098.1 (32883427)

Aliases : 32883427

Description : Pseudouridine synthase, RsuA/RluA [Interproscan].

Gene families : OG_01_0002988 (OrthoFinder) Phylogenetic Tree(s): OG0002988_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0023s0098.1
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method	Actions
lcl\|BLLF01001081.1_cds_GFH16996.1_11473	HaLaN_13527, GFH16996	RNA pseudouridine synthase 5 isoform X2	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
MF	GO:0009982	pseudouridine synthase activity	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016853	isomerase activity	None	Extended
MF	GO:0016866	intramolecular transferase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Enrichment
BP	GO:0002097	tRNA wobble base modification	IEP	Enrichment
BP	GO:0002098	tRNA wobble uridine modification	IEP	Enrichment
MF	GO:0004615	phosphomannomutase activity	IEP	Enrichment
MF	GO:0005375	copper ion transmembrane transporter activity	IEP	Enrichment
BP	GO:0006825	copper ion transport	IEP	Enrichment
BP	GO:0009225	nucleotide-sugar metabolic process	IEP	Enrichment
BP	GO:0009226	nucleotide-sugar biosynthetic process	IEP	Enrichment
BP	GO:0009298	GDP-mannose biosynthetic process	IEP	Enrichment
MF	GO:0016868	intramolecular transferase activity, phosphotransferases	IEP	Enrichment
BP	GO:0019673	GDP-mannose metabolic process	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
CC	GO:0033588	elongator holoenzyme complex	IEP	Enrichment
BP	GO:0035434	copper ion transmembrane transport	IEP	Enrichment
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Enrichment
BP	GO:0071586	CAAX-box protein processing	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006145	PsdUridine_synth_RsuA/RluA	321	493

External Links

No external refs found!