Vocar.0022s0221.1 (32891963)


Aliases : 32891963

Description : PRP1 splicing factor, N-terminal; Tetratricopeptide repeat [Interproscan].


Gene families : OG_01_0001986 (OrthoFinder) Phylogenetic Tree(s): OG0001986_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0022s0221.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000880.19 tig00000880_g5175.t1 Protein STABILIZED1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre14.g633650 30776534, PRP6 RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder
Cz07g30240.t1 No alias PRP1 splicing factor, N-terminal; Tetratricopeptide... 0.02 OrthoFinder
EOD22460 No alias Tetratricopeptide repeat; PRP1 splicing factor,... 0.03 OrthoFinder
OT_14G03060.1 No alias Tetratricopeptide repeat; PRP1 splicing factor,... 0.03 OrthoFinder
PTI_08G04110.1 No alias Tetratricopeptide repeat; PRP1 splicing factor,... 0.02 OrthoFinder
Sro987_g228260.1 Contig1137.g10933 mRNA-processing factor 6 0.04 OrthoFinder
XM_003059615.1 MicpuC2_70858, 70858 MRNA splicing protein 0.02 OrthoFinder
lcl|BLLF01003223.1_cds_GFH26738.1_21215 HaLaN_24934, GFH26738 TPR_REGION domain-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004484 mRNA guanylyltransferase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006370 7-methylguanosine mRNA capping IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0008192 RNA guanylyltransferase activity IEP Enrichment
BP GO:0009452 7-methylguanosine RNA capping IEP Enrichment
BP GO:0010498 proteasomal protein catabolic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
CC GO:0017119 Golgi transport complex IEP Enrichment
BP GO:0030163 protein catabolic process IEP Enrichment
MF GO:0031491 nucleosome binding IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
BP GO:0036260 RNA capping IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
BP GO:0043044 ATP-dependent chromatin remodeling IEP Enrichment
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
MF GO:0070568 guanylyltransferase activity IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901565 organonitrogen compound catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR010491 PRP1_N 27 173
No external refs found!