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  5. Vocar.0021s0177.1

Vocar.0021s0177.1 (32895947)


Aliases : 32895947

Description : ATP-dependent helicase, C-terminal; DEAD2 [Interproscan].


Gene families : OG_01_0000361 (OrthoFinder) Phylogenetic Tree(s): OG0000361_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0021s0177.1
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
Cre09.g397350 30781526 Regulator of telomere elongation helicase 1 homolog... 0.02 OrthoFinder
Cz02g00030.t1 No alias ATP-dependent helicase, C-terminal; DEAD2 [Interproscan]. 0.02 OrthoFinder
EOD09599 No alias Regulator of telomere elongation helicase [Ensembl]. 0.03 OrthoFinder
OT_04G00710.1 No alias ATP-dependent helicase, C-terminal; DNA polymerase... 0.03 OrthoFinder
OT_08G00240.1 No alias ATP-dependent helicase, C-terminal; DEAD2 [Interproscan]. 0.02 OrthoFinder
Sro13_g010240.1 Contig337.g4565 Helicase CHL1 0.03 OrthoFinder
TP03G00560.1 No alias ATP-dependent helicase, C-terminal; DEAD2 [Interproscan]. 0.01 OrthoFinder
XM_003063818.1 MicpuC2_4429, 4429 ATP-dependent helicase, C-terminal [Interproscan]. 0.02 OrthoFinder
XM_003063893.1 MicpuC2_30088, 30088 ATP-dependent helicase, C-terminal; DEAD2 [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000010.1_cds_PRW50821.1_1186 PRW50821 Fanconi anemia group J 0.03 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44978.1_1968 PRW44978 Regulator of telomere elongation helicase 1 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003678 DNA helicase activity IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006139 nucleobase-containing compound metabolic process IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
CC GO:0000808 origin recognition complex IEP Enrichment
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003937 IMP cyclohydrolase activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005667 transcription regulator complex IEP Enrichment
CC GO:0005669 transcription factor TFIID complex IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
MF GO:0008192 RNA guanylyltransferase activity IEP Enrichment
MF GO:0008193 tRNA guanylyltransferase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP Enrichment
MF GO:0070568 guanylyltransferase activity IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0090575 RNA polymerase II transcription regulator complex IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR006555 ATP-dep_Helicase_C 816 1070
IPR010614 DEAD_2 250 493
No external refs found!