Vocar.0021s0130.1 (32895939)

Aliases : 32895939

Description : Helicase, C-terminal; SNF2-related, N-terminal domain [Interproscan].

Gene families : OG_01_0002304 (OrthoFinder) Phylogenetic Tree(s): OG0002304_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0021s0130.1
Cluster	HCCA: Cluster_77

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000194.26	tig00000194_g14752.t1	Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1...	0.03	OrthoFinder
Cpa\|evm.model.tig00021501.9	tig00021501_g21949.t1	Chromatin organisation.chromatin remodeling...	0.04	OrthoFinder
Cre14.g618860	30776654	Chromatin organisation.chromatin remodeling...	0.03	OrthoFinder
Cz03g19100.t1	No alias	Helicase/SANT-associated domain; SNF2-related,...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000228	nuclear chromosome	IEP	Enrichment
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Enrichment
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Enrichment
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Enrichment
MF	GO:0003684	damaged DNA binding	IEP	Enrichment
CC	GO:0005634	nucleus	IEP	Enrichment
CC	GO:0005694	chromosome	IEP	Enrichment
BP	GO:0006338	chromatin remodeling	IEP	Enrichment
BP	GO:0008380	RNA splicing	IEP	Enrichment
CC	GO:0043226	organelle	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000330	SNF2_N	1195	1470
IPR001650	Helicase_C	1865	1973

External Links

No external refs found!