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  5. Vocar.0019s0264.1

Vocar.0019s0264.1 (32892799)


Aliases : 32892799

Description : Vacuolar protein sorting-associated protein 13, N-terminal domain; Vacuolar protein sorting-associated protein 13, C-terminal; Vacuolar protein sorting-associated protein 13, SHR-binding domain [Interproscan].


Gene families : OG_01_0000454 (OrthoFinder) Phylogenetic Tree(s): OG0000454_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0019s0264.1
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000042.91 tig00000042_g15491.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00000459.51 tig00000459_g1113.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00000551.1 tig00000551_g2023.t1 No description available 0.02 OrthoFinder
Cpa|evm.model.tig00000615.84 tig00000615_g2613.t1 No description available 0.01 OrthoFinder
Cpa|evm.model.tig00001343.3 tig00001343_g8327.t1 No description available 0.02 OrthoFinder
Cz02g19210.t1 No alias VPS13, repeated coiled region; Vacuolar protein... 0.03 OrthoFinder
Cz02g20010.t1 No alias Vacuolar protein sorting-associated protein 62 [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000617.1_cds_GFH13478.1_7955 HaLaN_09371, GFH13478 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56584.1_9635 PRW56584 Vacuolar sorting-associated 13A isoform B 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56585.1_9636 PRW56585 Vacuolar sorting-associated 13A isoform C 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000228 nuclear chromosome IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
CC GO:0005694 chromosome IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006606 protein import into nucleus IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
MF GO:0030247 polysaccharide binding IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034504 protein localization to nucleus IEP Enrichment
BP GO:0046907 intracellular transport IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051170 import into nucleus IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
BP GO:0051649 establishment of localization in cell IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
MF GO:2001070 starch binding IEP Enrichment
InterPro domains Description Start Stop
IPR026854 VPS13-like_N 2 114
IPR009543 SHR-BD 5601 5755
IPR031645 VPS13_C 6367 6580
No external refs found!