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  5. Vocar.0019s0166.1

Vocar.0019s0166.1 (32892861)


Aliases : 32892861

Description : LSM domain, eukaryotic/archaea-type [Interproscan].


Gene families : OG_01_0001195 (OrthoFinder) Phylogenetic Tree(s): OG0001195_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0019s0166.1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000944.19 tig00000944_g5941.t1 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.05 OrthoFinder
Cpa|evm.model.tig00001355.5 tig00001355_g8343.t1 RNA processing.RNA splicing.U6-associated LSm accessory... 0.04 OrthoFinder
Cre03.g151750 30787083 RNA processing.RNA splicing.U6-associated LSm accessory... 0.09 OrthoFinder
Cre05.g241300 30783199 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.06 OrthoFinder
Cz16g08090.t1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.06 OrthoFinder
EOD10326 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
XM_002502692.1 MICPUN_59039, 59039 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
XM_003060799.1 MicpuC2_19555, 19555 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495854.1_1852 KAA8495854 U6 snRNA-associated Sm-like protein LSm6 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Enrichment
CC GO:0000152 nuclear ubiquitin ligase complex IEP Enrichment
MF GO:0003714 transcription corepressor activity IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0005048 signal sequence binding IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005680 anaphase-promoting complex IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
CC GO:0005779 integral component of peroxisomal membrane IEP Enrichment
CC GO:0005787 signal peptidase complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006457 protein folding IEP Enrichment
BP GO:0006465 signal peptide processing IEP Enrichment
BP GO:0006621 protein retention in ER lumen IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
CC GO:0008250 oligosaccharyltransferase complex IEP Enrichment
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
BP GO:0016559 peroxisome fission IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0030515 snoRNA binding IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
CC GO:0031231 intrinsic component of peroxisomal membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Enrichment
BP GO:0032507 maintenance of protein location in cell IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0033218 amide binding IEP Enrichment
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Enrichment
MF GO:0042277 peptide binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0045185 maintenance of protein location IEP Enrichment
MF GO:0046923 ER retention sequence binding IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
BP GO:0048285 organelle fission IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051235 maintenance of location IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0051651 maintenance of location in cell IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0072595 maintenance of protein localization in organelle IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 16 80
No external refs found!