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  5. Vocar.0019s0079.1

Vocar.0019s0079.1 (32892630)


Aliases : 32892630

Description : RNA recognition motif domain; SWAP/Surp [Interproscan].


Gene families : OG_01_0002691 (OrthoFinder) Phylogenetic Tree(s): OG0002691_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0019s0079.1
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
Cz14g16190.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Cz14g16200.t1 No alias SWAP/Surp; RNA polymerase II-binding domain; mRNA... 0.02 OrthoFinder
OT_01G03610.1 No alias SWAP/Surp; RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
OT_11G01230.1 No alias Hypothetical protein 0.02 OrthoFinder
XM_003061730.1 MicpuC2_41706, 41706 RNA recognition motif domain; SWAP/Surp [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003872 6-phosphofructokinase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0004555 alpha,alpha-trehalase activity IEP Enrichment
MF GO:0004659 prenyltransferase activity IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0008318 protein prenyltransferase activity IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
MF GO:0008521 acetyl-CoA transmembrane transporter activity IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
MF GO:0015927 trehalase activity IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
BP GO:0018342 protein prenylation IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
MF GO:0042887 amide transmembrane transporter activity IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0071077 adenosine 3',5'-bisphosphate transmembrane transporter activity IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0097354 prenylation IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
MF GO:1901682 sulfur compound transmembrane transporter activity IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 234 307
IPR000061 Surp 381 430
No external refs found!