Vocar.0018s0255.1 (32898628)

Aliases : 32898628

Description : GTP-binding protein TrmE, N-terminal; MnmE, helical domain; GTP binding domain [Interproscan].

Gene families : OG_01_0001602 (OrthoFinder) Phylogenetic Tree(s): OG0001602_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0018s0255.1
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method	Actions
EOD32293	No alias	GTP-binding protein TrmE, N-terminal; GTP binding...	0.01	OrthoFinder
Transcript_contig_6775	6775	GTP-binding protein TrmE, N-terminal [Interproscan].	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Enrichment
BP	GO:0002098	tRNA wobble uridine modification	IEP	Enrichment
CC	GO:0005575	cellular_component	IEP	Enrichment
BP	GO:0006325	chromatin organization	IEP	Enrichment
BP	GO:0006338	chromatin remodeling	IEP	Enrichment
BP	GO:0006400	tRNA modification	IEP	Enrichment
BP	GO:0008033	tRNA processing	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
CC	GO:0033588	elongator holoenzyme complex	IEP	Enrichment
BP	GO:0034728	nucleosome organization	IEP	Enrichment
BP	GO:0043044	ATP-dependent chromatin remodeling	IEP	Enrichment
CC	GO:0043226	organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
BP	GO:0043486	histone exchange	IEP	Enrichment
BP	GO:0043933	protein-containing complex subunit organization	IEP	Enrichment
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Enrichment
CC	GO:0110165	cellular anatomical entity	IEP	Enrichment
CC	GO:0140535	intracellular protein-containing complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006073	GTP-bd	358	460
IPR018948	GTP-bd_TrmE_N	140	261
IPR025867	MnmE_helical	264	694

External Links

No external refs found!