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  5. Vocar.0018s0223.1

Vocar.0018s0223.1 (32898468)


Aliases : 32898468

Description : DEAD/DEAH box helicase domain; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0000107 (OrthoFinder) Phylogenetic Tree(s): OG0000107_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0018s0223.1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
EOD12459 No alias Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
OT_03G01700.1 No alias Helicase, C-terminal; RQC domain; ATP-dependent DNA... 0.03 OrthoFinder
OT_04G00490.1 No alias DEAD/DEAH box helicase domain; HRDC domain; Helicase,... 0.01 OrthoFinder
XM_003056852.1 MicpuC2_636, 636 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006352 DNA-templated transcription, initiation IEP Enrichment
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Enrichment
BP GO:0006479 protein methylation IEP Enrichment
BP GO:0006480 N-terminal protein amino acid methylation IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006623 protein targeting to vacuole IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
BP GO:0008213 protein alkylation IEP Enrichment
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
BP GO:0031365 N-terminal protein amino acid modification IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0043414 macromolecule methylation IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072665 protein localization to vacuole IEP Enrichment
BP GO:0072666 establishment of protein localization to vacuole IEP Enrichment
InterPro domains Description Start Stop
IPR001650 Helicase_C 234 340
IPR011545 DEAD/DEAH_box_helicase_dom 23 187
No external refs found!