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Aliases : 32898571
Description : Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan].
Gene families : OG_01_0000264 (OrthoFinder) Phylogenetic Tree(s): OG0000264_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Vocar.0018s0127.1 | |
| Cluster | HCCA: Cluster_82 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre16.g679900 | 30777977, XRN3 | 5-3 exoribonuclease 3 OS=Arabidopsis thaliana | 0.02 | OrthoFinder | |
| Dusal.0001s00024.1 | 33198788 | Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. | 0.02 | OrthoFinder | |
| EOD35259 | No alias | Xrn1, helical domain [Interproscan]. | 0.01 | OrthoFinder | |
| EOD36897 | No alias | Putative 5-3 exonuclease [Interproscan]. | 0.02 | OrthoFinder | |
| EOD37797 | No alias | Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. | 0.02 | OrthoFinder | |
| OT_06G03940.1 | No alias | Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. | 0.04 | OrthoFinder | |
| PTI_01G08170.1 | No alias | 5'-3' exoribonuclease 1, SH3-like domain; Xrn1, helical... | 0.01 | OrthoFinder | |
| PTI_16G00600.1 | No alias | Putative 5-3 exonuclease; Xrn1, helical domain [Interproscan]. | 0.05 | OrthoFinder | |
| PTI_18G00430.1 | No alias | Putative 5-3 exonuclease; Xrn1, helical domain;... | 0.07 | OrthoFinder | |
| Sro1238_g255270.1 | Contig4178.g31874 | 5'-3' exoribonuclease 2 | 0.01 | OrthoFinder | |
| Sro654_g182080.1 | Contig1277.g11898 | 5'-3' exoribonuclease | 0.01 | OrthoFinder | |
| Sro662_g183380.1 | Contig3613.g27932 | 5'-3' exoribonuclease | 0.03 | OrthoFinder | |
| lcl|LHPG02000007.1_cds_PRW57491.1_8980 | PRW57491 | 5-3 exoribonuclease 2 | 0.05 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| MF | GO:0004527 | exonuclease activity | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| MF | GO:0003677 | DNA binding | IEP | Enrichment |
| MF | GO:0003909 | DNA ligase activity | IEP | Enrichment |
| MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Enrichment |
| MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | Enrichment |
| MF | GO:0004185 | serine-type carboxypeptidase activity | IEP | Enrichment |
| MF | GO:0004386 | helicase activity | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| CC | GO:0005643 | nuclear pore | IEP | Enrichment |
| CC | GO:0005730 | nucleolus | IEP | Enrichment |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0006310 | DNA recombination | IEP | Enrichment |
| BP | GO:0006396 | RNA processing | IEP | Enrichment |
| BP | GO:0006405 | RNA export from nucleus | IEP | Enrichment |
| BP | GO:0006406 | mRNA export from nucleus | IEP | Enrichment |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
| BP | GO:0006813 | potassium ion transport | IEP | Enrichment |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Enrichment |
| MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
| MF | GO:0008168 | methyltransferase activity | IEP | Enrichment |
| BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
| MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Enrichment |
| MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Enrichment |
| MF | GO:0016887 | ATPase | IEP | Enrichment |
| BP | GO:0016973 | poly(A)+ mRNA export from nucleus | IEP | Enrichment |
| MF | GO:0017056 | structural constituent of nuclear pore | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| MF | GO:0043015 | gamma-tubulin binding | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
| BP | GO:0050657 | nucleic acid transport | IEP | Enrichment |
| BP | GO:0050658 | RNA transport | IEP | Enrichment |
| BP | GO:0051028 | mRNA transport | IEP | Enrichment |
| BP | GO:0051168 | nuclear export | IEP | Enrichment |
| BP | GO:0051169 | nuclear transport | IEP | Enrichment |
| BP | GO:0051236 | establishment of RNA localization | IEP | Enrichment |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Enrichment |
| CC | GO:0140513 | nuclear protein-containing complex | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
| No external refs found! |