Vocar.0018s0008.1 (32898757)

Aliases : 32898757

Description : Ribosomal protein S13 [Interproscan].

Gene families : OG_01_0000909 (OrthoFinder) Phylogenetic Tree(s): OG0000909_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0018s0008.1
Cluster	HCCA: Cluster_102

Target	Alias	Description	ECC score	Gene Family Method
Cz12g20170.t1	No alias	Ribosomal protein S13 [Interproscan].	0.03	OrthoFinder
OT_03G05840.1	No alias	Ribosomal protein S13 [Interproscan].	0.03	OrthoFinder
XM_002506993.1	MICPUN_89270, 89270	Ribosomal protein S13, chloroplast precursor (RPS13)	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Enrichment
CC	GO:0000814	ESCRT II complex	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003954	NADH dehydrogenase activity	IEP	Enrichment
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	Enrichment
CC	GO:0005739	mitochondrion	IEP	Enrichment
CC	GO:0005750	mitochondrial respiratory chain complex III	IEP	Enrichment
CC	GO:0005779	integral component of peroxisomal membrane	IEP	Enrichment
CC	GO:0005787	signal peptidase complex	IEP	Enrichment
CC	GO:0005789	endoplasmic reticulum membrane	IEP	Enrichment
BP	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c	IEP	Enrichment
BP	GO:0006465	signal peptide processing	IEP	Enrichment
BP	GO:0006487	protein N-linked glycosylation	IEP	Enrichment
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Enrichment
CC	GO:0008250	oligosaccharyltransferase complex	IEP	Enrichment
MF	GO:0009055	electron transfer activity	IEP	Enrichment
BP	GO:0009060	aerobic respiration	IEP	Enrichment
BP	GO:0009143	nucleoside triphosphate catabolic process	IEP	Enrichment
CC	GO:0015934	large ribosomal subunit	IEP	Enrichment
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	Enrichment
CC	GO:0016021	integral component of membrane	IEP	Enrichment
BP	GO:0016192	vesicle-mediated transport	IEP	Enrichment
CC	GO:0016272	prefoldin complex	IEP	Enrichment
BP	GO:0016559	peroxisome fission	IEP	Enrichment
MF	GO:0016651	oxidoreductase activity, acting on NAD(P)H	IEP	Enrichment
MF	GO:0016655	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor	IEP	Enrichment
BP	GO:0019646	aerobic electron transport chain	IEP	Enrichment
BP	GO:0022900	electron transport chain	IEP	Enrichment
BP	GO:0022904	respiratory electron transport chain	IEP	Enrichment
CC	GO:0031224	intrinsic component of membrane	IEP	Enrichment
CC	GO:0031231	intrinsic component of peroxisomal membrane	IEP	Enrichment
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Enrichment
CC	GO:0031301	integral component of organelle membrane	IEP	Enrichment
CC	GO:0032991	protein-containing complex	IEP	Enrichment
CC	GO:0032993	protein-DNA complex	IEP	Enrichment
BP	GO:0034404	nucleobase-containing small molecule biosynthetic process	IEP	Enrichment
CC	GO:0035145	exon-exon junction complex	IEP	Enrichment
CC	GO:0036452	ESCRT complex	IEP	Enrichment
CC	GO:0044391	ribosomal subunit	IEP	Enrichment
CC	GO:0044815	DNA packaging complex	IEP	Enrichment
CC	GO:0045275	respiratory chain complex III	IEP	Enrichment
BP	GO:0045333	cellular respiration	IEP	Enrichment
MF	GO:0047429	nucleoside-triphosphate diphosphatase activity	IEP	Enrichment
BP	GO:0048285	organelle fission	IEP	Enrichment
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Enrichment
CC	GO:0070069	cytochrome complex	IEP	Enrichment
BP	GO:0071985	multivesicular body sorting pathway	IEP	Enrichment
CC	GO:0098796	membrane protein complex	IEP	Enrichment
CC	GO:0098798	mitochondrial protein-containing complex	IEP	Enrichment
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Enrichment
CC	GO:0098803	respiratory chain complex	IEP	Enrichment
CC	GO:0140534	endoplasmic reticulum protein-containing complex	IEP	Enrichment
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	Enrichment
CC	GO:1902494	catalytic complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	6	93

External Links

No external refs found!

Vocar.0018s0008.1 (32898757)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation