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  5. Vocar.0017s0076.1

Vocar.0017s0076.1 (32891556)


Aliases : 32891556

Description : Zinc finger, RanBP2-type; RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000644 (OrthoFinder) Phylogenetic Tree(s): OG0000644_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0017s0076.1
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.52 tig00000194_g14781.t1 RNA biosynthesis.RNA polymerase II-dependent... 0.02 OrthoFinder
lcl|LHPG02000023.1_cds_PRW20450.1_5358 PRW20450 Zn-containing 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000149 SNARE binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003697 single-stranded DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004133 glycogen debranching enzyme activity IEP Enrichment
MF GO:0004134 4-alpha-glucanotransferase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004523 RNA-DNA hybrid ribonuclease activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005963 magnesium-dependent protein serine/threonine phosphatase complex IEP Enrichment
BP GO:0006281 DNA repair IEP Enrichment
BP GO:0006338 chromatin remodeling IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
CC GO:0008287 protein serine/threonine phosphatase complex IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0019888 protein phosphatase regulator activity IEP Enrichment
MF GO:0019905 syntaxin binding IEP Enrichment
CC GO:0030173 integral component of Golgi membrane IEP Enrichment
CC GO:0030289 protein phosphatase 4 complex IEP Enrichment
CC GO:0031228 intrinsic component of Golgi membrane IEP Enrichment
CC GO:0031300 intrinsic component of organelle membrane IEP Enrichment
CC GO:0031301 integral component of organelle membrane IEP Enrichment
MF GO:0031491 nucleosome binding IEP Enrichment
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
BP GO:0043044 ATP-dependent chromatin remodeling IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
CC GO:1903293 phosphatase complex IEP Enrichment
InterPro domains Description Start Stop
IPR001876 Znf_RanBP2 282 309
IPR001876 Znf_RanBP2 167 195
IPR000504 RRM_dom 18 90
No external refs found!