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  5. Vocar.0016s0291.1

Vocar.0016s0291.1 (32898038)


Aliases : 32898038

Description : Mechanosensitive ion channel MscS [Interproscan].


Gene families : OG_01_0000453 (OrthoFinder) Phylogenetic Tree(s): OG0000453_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0016s0291.1
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
Dusal.0085s00029.1 33196238 Mechanosensitive ion channel MscS [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
CC GO:0005813 centrosome IEP Enrichment
CC GO:0005815 microtubule organizing center IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0007098 centrosome cycle IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030119 AP-type membrane coat adaptor complex IEP Enrichment
CC GO:0030131 clathrin adaptor complex IEP Enrichment
BP GO:0031023 microtubule organizing center organization IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
InterPro domains Description Start Stop
IPR006685 MscS_channel 476 620
No external refs found!