Vocar.0016s0256.1 (32897896)

Aliases : 32897896

Description : SLIDE domain; ISWI, HAND domain; Helicase, C-terminal; SNF2-related, N-terminal domain [Interproscan].

Gene families : OG_01_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0016s0256.1
Cluster	HCCA: Cluster_93

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000217.25	tig00000217_g19158.t1	Chromatin structure-remodeling complex protein SYD...	0.03	OrthoFinder
Cpa\|evm.model.tig00000350.9	tig00000350_g24309.t1	CHD3-type chromatin-remodeling factor PICKLE...	0.03	OrthoFinder
Cpa\|evm.model.tig00021623.13	tig00021623_g23013.t1	RNA biosynthesis.transcriptional activation.PHD finger...	0.01	OrthoFinder
Cre07.g325700	30774388	ATP-dependent helicase BRM OS=Arabidopsis thaliana	0.02	OrthoFinder
Cre09.g390000	30781417	RNA biosynthesis.transcriptional activation.PHD finger...	0.02	OrthoFinder
Cre12.g508150	30793288	Chromatin organisation.chromatin remodeling...	0.04	OrthoFinder
Cz04g34020.t1	No alias	Helicase, C-terminal; Chromo domain; SNF2-related,...	0.02	OrthoFinder
Cz05g24240.t1	No alias	SNF2-related, N-terminal domain; Helicase, C-terminal...	0.02	OrthoFinder
Dusal.0047s00031.1	33194295	Helicase, C-terminal; SLIDE domain; ISWI, HAND domain;...	0.02	OrthoFinder
Dusal.0357s00004.1	33189829	SNF2-related, N-terminal domain; Helicase, C-terminal;...	0.02	OrthoFinder
Dusal.0752s00002.1	33199466	Domain of unknown function DUF3535; SNF2-related,...	0.02	OrthoFinder
Dusal.0752s00003.1	33199467	HEAT-like repeat [Interproscan].	0.02	OrthoFinder
EOD04122	No alias	Helicase, C-terminal; Zinc finger, PHD-finger;...	0.01	OrthoFinder
EOD18155	No alias	High mobility group box domain; ISWI, HAND domain;...	0.02	OrthoFinder
EOD25651	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.01	OrthoFinder
EOD31716	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
EOD33503	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
EOD36957	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.03	OrthoFinder
EOD37625	No alias	Helicase, C-terminal; Zinc finger, PHD-finger;...	0.01	OrthoFinder
OT_01G05670.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.02	OrthoFinder
OT_06G03660.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain;...	0.03	OrthoFinder
OT_07G04400.1	No alias	Helicase, C-terminal; ISWI, HAND domain; SNF2-related,...	0.01	OrthoFinder
OT_17G01920.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
PTI_01G08190.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.01	OrthoFinder
PTI_03G03660.1	No alias	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.01	OrthoFinder
PTI_05G01880.1	No alias	High mobility group box domain; Helicase, C-terminal;...	0.02	OrthoFinder
PTI_10G02350.1	No alias	Chromo domain; SNF2-related, N-terminal domain [Interproscan].	0.02	OrthoFinder
Sro125_g060200.1	Contig2833.g22731	Chromodomain-helicase-DNA-binding protein	0.01	OrthoFinder
Transcript_contig_54441	54441	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.01	OrthoFinder
XM_002502289.1	MICPUN_58978, 58978	SNF2 super family	0.02	OrthoFinder
XM_002503125.1	MICPUN_91017, 91017	SNF2 super family	0.01	OrthoFinder
XM_002503134.1	MICPUN_59225, 59225	SNF2 super family	0.02	OrthoFinder
XM_002504726.1	MICPUN_62221, 62221	SNF2 super family	0.02	OrthoFinder
XM_003061140.1	MicpuC2_28265, 28265	SNF2 super family	0.02	OrthoFinder
XM_003062821.1	MicpuC2_52710, 52710	FY-rich, N-terminal; Helicase, C-terminal; FY-rich,...	0.02	OrthoFinder
lcl\|BLLF01000001.1_cds_GFH05549.1_26	HaLaN_00029, GFH05549	Helicase, C-terminal; SLIDE domain; ISWI, HAND domain...	0.02	OrthoFinder
lcl\|BLLF01000629.1_cds_GFH13581.1_8058	HaLaN_09499, GFH13581	SNF2-related, N-terminal domain [Interproscan].	0.01	OrthoFinder
lcl\|BLLF01000629.1_cds_GFH13582.1_8059	HaLaN_09500, GFH13582	Helicase, C-terminal [Interproscan].	0.02	OrthoFinder
lcl\|BLLF01001410.1_cds_GFH19126.1_13603	HaLaN_16027, GFH19126	Helicase, C-terminal; SNF2-related, N-terminal domain...	0.02	OrthoFinder
lcl\|BLLF01003474.1_cds_GFH27437.1_21914	HaLaN_25757, GFH27437	SNF2-related, N-terminal domain [Interproscan].	0.02	OrthoFinder
lcl\|LHPG02000001.1_cds_PRW61596.1_539	PRW61596	CHD3-type chromatin-remodeling factor PICKLE	0.02	OrthoFinder
lcl\|LHPG02000002.1_cds_PRW60864.1_4118	PRW60864	SNF2 super family	0.02	OrthoFinder
lcl\|LHPG02000008.1_cds_PRW56740.1_9705	PRW56740	Chromatin-remodeling complex ATPase chain	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003682	chromatin binding	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006338	chromatin remodeling	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0031491	nucleosome binding	IEA	Interproscan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043044	ATP-dependent chromatin remodeling	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000149	SNARE binding	IEP	Enrichment
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Enrichment
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Enrichment
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Enrichment
MF	GO:0003697	single-stranded DNA binding	IEP	Enrichment
MF	GO:0004133	glycogen debranching enzyme activity	IEP	Enrichment
MF	GO:0004134	4-alpha-glucanotransferase activity	IEP	Enrichment
MF	GO:0004672	protein kinase activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
CC	GO:0005681	spliceosomal complex	IEP	Enrichment
BP	GO:0006281	DNA repair	IEP	Enrichment
BP	GO:0006289	nucleotide-excision repair	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006397	mRNA processing	IEP	Enrichment
BP	GO:0006464	cellular protein modification process	IEP	Enrichment
BP	GO:0006468	protein phosphorylation	IEP	Enrichment
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Enrichment
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Enrichment
BP	GO:0008380	RNA splicing	IEP	Enrichment
MF	GO:0009916	alternative oxidase activity	IEP	Enrichment
BP	GO:0010498	proteasomal protein catabolic process	IEP	Enrichment
BP	GO:0016071	mRNA metabolic process	IEP	Enrichment
MF	GO:0016301	kinase activity	IEP	Enrichment
BP	GO:0016310	phosphorylation	IEP	Enrichment
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Enrichment
MF	GO:0016682	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor	IEP	Enrichment
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Enrichment
MF	GO:0019905	syntaxin binding	IEP	Enrichment
BP	GO:0030163	protein catabolic process	IEP	Enrichment
CC	GO:0030173	integral component of Golgi membrane	IEP	Enrichment
CC	GO:0031228	intrinsic component of Golgi membrane	IEP	Enrichment
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Enrichment
CC	GO:0031301	integral component of organelle membrane	IEP	Enrichment
BP	GO:0033554	cellular response to stress	IEP	Enrichment
BP	GO:0036211	protein modification process	IEP	Enrichment
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Enrichment
BP	GO:0043170	macromolecule metabolic process	IEP	Enrichment
BP	GO:0043412	macromolecule modification	IEP	Enrichment
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Enrichment
BP	GO:0051716	cellular response to stimulus	IEP	Enrichment
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR015194	ISWI_HAND-dom	744	843
IPR015195	SLIDE	900	1010
IPR000330	SNF2_N	184	454
IPR001650	Helicase_C	477	589

External Links

No external refs found!

Vocar.0016s0256.1 (32897896)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation