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  5. Vocar.0016s0136.1

Vocar.0016s0136.1 (32898014)


Aliases : 32898014

Description : WD40 repeat [Interproscan].


Gene families : OG_01_0001154 (OrthoFinder) Phylogenetic Tree(s): OG0001154_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0016s0136.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
Cz02g17240.t1 No alias WD40 repeat [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Enrichment
MF GO:0005381 iron ion transmembrane transporter activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006826 iron ion transport IEP Enrichment
BP GO:0008612 peptidyl-lysine modification to peptidyl-hypusine IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
CC GO:0031082 BLOC complex IEP Enrichment
CC GO:0031083 BLOC-1 complex IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
CC GO:0033573 high-affinity iron permease complex IEP Enrichment
BP GO:0034755 iron ion transmembrane transport IEP Enrichment
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Enrichment
BP GO:0051604 protein maturation IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:1902495 transmembrane transporter complex IEP Enrichment
CC GO:1905862 ferroxidase complex IEP Enrichment
CC GO:1990351 transporter complex IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 333 363
IPR001680 WD40_repeat 114 147
IPR001680 WD40_repeat 238 278
IPR001680 WD40_repeat 62 97
IPR001680 WD40_repeat 289 322
IPR001680 WD40_repeat 153 190
IPR001680 WD40_repeat 368 404
IPR001680 WD40_repeat 197 234
No external refs found!