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  5. Vocar.0016s0012.1

Vocar.0016s0012.1 (32897929)


Aliases : 32897929

Description : Ribosomal protein L3 [Interproscan].


Gene families : OG_01_0002780 (OrthoFinder) Phylogenetic Tree(s): OG0002780_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0016s0012.1
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000025.50 tig00000025_g7954.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.14 OrthoFinder
Cre10.g417700 30789966, RPL3 Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder
Cz12g24070.t1 No alias Ribosomal protein L3 [Interproscan]. 0.14 OrthoFinder
Dusal.0375s00002.1 33193949 Ribosomal protein L3 [Interproscan]. 0.07 OrthoFinder
EOD37150 No alias 60S ribosomal protein L3 [Ensembl]. 0.06 OrthoFinder
OT_01G00490.1 No alias Ribosomal protein L3 [Interproscan]. 0.12 OrthoFinder
PTI_11G03220.1 No alias Ribosomal protein L3 [Interproscan]. 0.09 OrthoFinder
Sro49_g028920.1 Contig2054.g17642 60S ribosomal protein L3 0.1 OrthoFinder
Sro691_g187740.1 Contig1133.g10869 60S ribosomal protein L3 0.11 OrthoFinder
TP07G02750.1 No alias Ribosomal protein L3 [Interproscan]. 0.14 OrthoFinder
XM_002507702.1 MICPUN_89851, 89851 Ribosomal protein L3 0.12 OrthoFinder
lcl|BLLF01003811.1_cds_GFH28271.1_22748 HaLaN_26740, GFH28271 Ribosomal protein L3 0.03 OrthoFinder
lcl|LHPG02000012.1_cds_PRW44927.1_1937 PRW44927 60S ribosomal L3 0.11 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495890.1_1888 KAA8495890 60S ribosomal protein L3 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008121 ubiquinol-cytochrome-c reductase activity IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000597 Ribosomal_L3 1 367
No external refs found!