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  5. Vocar.0015s0355.1

Vocar.0015s0355.1 (32899154)


Aliases : 32899154

Description : WD40 repeat [Interproscan].


Gene families : OG_01_0001555 (OrthoFinder) Phylogenetic Tree(s): OG0001555_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0015s0355.1
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
Cre03.g178050 30787367, MOT51 WD repeat-containing protein GTS1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz01g41150.t1 No alias Hypothetical protein 0.04 OrthoFinder
Sro88_g046630.1 Contig265.g3321 WD repeat-containing protein 89 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000213 tRNA-intron endonuclease activity IEP Enrichment
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004197 cysteine-type endopeptidase activity IEP Enrichment
MF GO:0004521 endoribonuclease activity IEP Enrichment
MF GO:0004549 tRNA-specific ribonuclease activity IEP Enrichment
MF GO:0005337 nucleoside transmembrane transporter activity IEP Enrichment
BP GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0015858 nucleoside transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
BP GO:0016485 protein processing IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0071586 CAAX-box protein processing IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
BP GO:1901642 nucleoside transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 88 126
IPR001680 WD40_repeat 171 204
No external refs found!