1. Home
  2. Species
  3. Volvox carteri
  4. Sequence
  5. Vocar.0015s0354.1

Vocar.0015s0354.1 (32898827)


Aliases : 32898827

Description : WD40 repeat; HELP; PLAT/LH2 domain [Interproscan].


Gene families : OG_01_0000109 (OrthoFinder) Phylogenetic Tree(s): OG0000109_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0015s0354.1
Cluster HCCA: Cluster_59

Target Alias Description ECC score Gene Family Method Actions
Cz01g41170.t1 No alias WD40 repeat; PLAT/LH2 domain [Interproscan]. 0.02 OrthoFinder
Cz06g28190.t1 No alias Pleckstrin homology domain; PLAT/LH2 domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005044 scavenger receptor activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016757 glycosyltransferase activity IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
MF GO:0038024 cargo receptor activity IEP Enrichment
InterPro domains Description Start Stop
IPR005108 HELP 128 198
IPR001024 PLAT/LH2_dom 1644 1759
IPR001024 PLAT/LH2_dom 2788 2891
IPR001024 PLAT/LH2_dom 2282 2385
IPR001024 PLAT/LH2_dom 1392 1502
IPR001024 PLAT/LH2_dom 2538 2640
IPR001024 PLAT/LH2_dom 2412 2517
IPR001024 PLAT/LH2_dom 2026 2129
IPR001024 PLAT/LH2_dom 3038 3146
IPR001024 PLAT/LH2_dom 3344 3446
IPR001024 PLAT/LH2_dom 1137 1241
IPR001024 PLAT/LH2_dom 1774 1881
IPR001024 PLAT/LH2_dom 1009 1120
IPR001024 PLAT/LH2_dom 2662 2767
IPR001024 PLAT/LH2_dom 2911 3014
IPR001024 PLAT/LH2_dom 1261 1371
IPR001024 PLAT/LH2_dom 3186 3287
IPR001024 PLAT/LH2_dom 880 983
IPR001024 PLAT/LH2_dom 1523 1624
IPR001024 PLAT/LH2_dom 2156 2257
IPR001024 PLAT/LH2_dom 1904 2008
IPR001680 WD40_repeat 204 248
IPR001680 WD40_repeat 777 808
No external refs found!