Vocar.0015s0303.1 (32899190)

Aliases : 32899190

Description : Paired amphipathic helix; Sin3, C-terminal; Histone deacetylase interacting domain [Interproscan].

Gene families : OG_01_0001776 (OrthoFinder) Phylogenetic Tree(s): OG0001776_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0015s0303.1
Cluster	HCCA: Cluster_77

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00001155.28	tig00001155_g7334.t1	Paired amphipathic helix protein Sin3-like 1...	0.02	OrthoFinder
Cpa\|evm.model.tig00021234.23	tig00021234_g19397.t1	Paired amphipathic helix protein Sin3-like 3...	0.02	OrthoFinder
Cre03.g180800	30788010	Paired amphipathic helix protein Sin3-like 4...	0.04	OrthoFinder
EOD23007	No alias	Histone deacetylase interacting domain; Sin3,...	0.04	OrthoFinder
OT_01G04000.1	No alias	Sin3, C-terminal; Paired amphipathic helix; Histone...	0.03	OrthoFinder
PTI_29G00720.1	No alias	Paired amphipathic helix; Histone deacetylase...	0.03	OrthoFinder
XM_002507082.1	MICPUN_55021, 55021	SIN3 component of histone deacetylase complex (SIN3)	0.03	OrthoFinder
lcl\|BLLF01001226.1_cds_GFH17943.1_12420	HaLaN_14668, GFH17943	HDAC_interact domain-containing protein	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Enrichment
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Enrichment
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Enrichment
MF	GO:0003674	molecular_function	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003682	chromatin binding	IEP	Enrichment
MF	GO:0003684	damaged DNA binding	IEP	Enrichment
MF	GO:0004133	glycogen debranching enzyme activity	IEP	Enrichment
MF	GO:0004134	4-alpha-glucanotransferase activity	IEP	Enrichment
MF	GO:0004672	protein kinase activity	IEP	Enrichment
MF	GO:0004843	thiol-dependent deubiquitinase	IEP	Enrichment
MF	GO:0005488	binding	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
CC	GO:0005634	nucleus	IEP	Enrichment
CC	GO:0005963	magnesium-dependent protein serine/threonine phosphatase complex	IEP	Enrichment
BP	GO:0006281	DNA repair	IEP	Enrichment
BP	GO:0006289	nucleotide-excision repair	IEP	Enrichment
BP	GO:0006338	chromatin remodeling	IEP	Enrichment
BP	GO:0006464	cellular protein modification process	IEP	Enrichment
BP	GO:0006468	protein phosphorylation	IEP	Enrichment
BP	GO:0006508	proteolysis	IEP	Enrichment
BP	GO:0006606	protein import into nucleus	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
BP	GO:0006812	cation transport	IEP	Enrichment
BP	GO:0006891	intra-Golgi vesicle-mediated transport	IEP	Enrichment
BP	GO:0006913	nucleocytoplasmic transport	IEP	Enrichment
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Enrichment
MF	GO:0008242	omega peptidase activity	IEP	Enrichment
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	Enrichment
MF	GO:0008324	cation transmembrane transporter activity	IEP	Enrichment
BP	GO:0009987	cellular process	IEP	Enrichment
BP	GO:0010498	proteasomal protein catabolic process	IEP	Enrichment
MF	GO:0016301	kinase activity	IEP	Enrichment
BP	GO:0016310	phosphorylation	IEP	Enrichment
BP	GO:0016579	protein deubiquitination	IEP	Enrichment
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Enrichment
BP	GO:0017038	protein import	IEP	Enrichment
CC	GO:0017119	Golgi transport complex	IEP	Enrichment
BP	GO:0019538	protein metabolic process	IEP	Enrichment
MF	GO:0019783	ubiquitin-like protein-specific protease activity	IEP	Enrichment
CC	GO:0019867	outer membrane	IEP	Enrichment
MF	GO:0019888	protein phosphatase regulator activity	IEP	Enrichment
BP	GO:0030163	protein catabolic process	IEP	Enrichment
CC	GO:0030173	integral component of Golgi membrane	IEP	Enrichment
CC	GO:0030289	protein phosphatase 4 complex	IEP	Enrichment
CC	GO:0031228	intrinsic component of Golgi membrane	IEP	Enrichment
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Enrichment
CC	GO:0031301	integral component of organelle membrane	IEP	Enrichment
MF	GO:0031491	nucleosome binding	IEP	Enrichment
CC	GO:0033179	proton-transporting V-type ATPase, V0 domain	IEP	Enrichment
BP	GO:0033554	cellular response to stress	IEP	Enrichment
BP	GO:0034504	protein localization to nucleus	IEP	Enrichment
BP	GO:0036211	protein modification process	IEP	Enrichment
BP	GO:0043044	ATP-dependent chromatin remodeling	IEP	Enrichment
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	Enrichment
BP	GO:0043170	macromolecule metabolic process	IEP	Enrichment
CC	GO:0043227	membrane-bounded organelle	IEP	Enrichment
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Enrichment
BP	GO:0043412	macromolecule modification	IEP	Enrichment
BP	GO:0044238	primary metabolic process	IEP	Enrichment
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Enrichment
BP	GO:0044267	cellular protein metabolic process	IEP	Enrichment
MF	GO:0044877	protein-containing complex binding	IEP	Enrichment
BP	GO:0048193	Golgi vesicle transport	IEP	Enrichment
BP	GO:0051169	nuclear transport	IEP	Enrichment
BP	GO:0051170	import into nucleus	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	IEP	Enrichment
BP	GO:0051716	cellular response to stimulus	IEP	Enrichment
BP	GO:0070646	protein modification by small protein removal	IEP	Enrichment
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
MF	GO:0101005	deubiquitinase activity	IEP	Enrichment
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Enrichment
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Enrichment
CC	GO:1903293	phosphatase complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR013194	HDAC_interact_dom	390	484
IPR003822	PAH	59	103
IPR003822	PAH	296	338
IPR003822	PAH	151	194
IPR031693	Sin3_C	887	1157

External Links

No external refs found!

Vocar.0015s0303.1 (32899190)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation