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  5. Vocar.0012s0273.1

Vocar.0012s0273.1 (32895004)


Aliases : 32895004

Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000163 (OrthoFinder) Phylogenetic Tree(s): OG0000163_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0012s0273.1
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021464.4 tig00021464_g21711.t1 No description available 0.02 OrthoFinder
Cre07.g352650 30775322 No description available 0.03 OrthoFinder
Cre09.g391949 30781196 RNA processing.RNA splicing.U2-type-intron-specific... 0.06 OrthoFinder
Cz03g21120.t1 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Cz04g00020.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Dusal.0647s00003.1 33194461 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Dusal.0862s00006.1 33191519 Hypothetical protein 0.02 OrthoFinder
EOD21349 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
EOD34357 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
EOD35081 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
UNPLg00511.t1 No alias Hypothetical protein 0.02 OrthoFinder
XM_003057013.1 MicpuC2_62698, 62698 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
XM_003061000.1 MicpuC2_20014, 20014 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000063.1_cds_GFH06919.1_1396 HaLaN_01639, GFH06919 U2 snRNP auxiliary factor large subunit 0.03 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45747.1_1280 PRW45747 Chorismate lyase isoform B 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003856 3-dehydroquinate synthase activity IEP Enrichment
MF GO:0004298 threonine-type endopeptidase activity IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0005049 nuclear export signal receptor activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005839 proteasome core complex IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006473 protein acetylation IEP Enrichment
BP GO:0006475 internal protein amino acid acetylation IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
BP GO:0016573 histone acetylation IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0018205 peptidyl-lysine modification IEP Enrichment
BP GO:0018393 internal peptidyl-lysine acetylation IEP Enrichment
BP GO:0018394 peptidyl-lysine acetylation IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
CC GO:0031248 protein acetyltransferase complex IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043543 protein acylation IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
MF GO:0070003 threonine-type peptidase activity IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140142 nucleocytoplasmic carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
CC GO:1902493 acetyltransferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 232 304
No external refs found!