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  5. Vocar.0012s0105.1

Vocar.0012s0105.1 (32894898)


Aliases : 32894898

Description : OB-fold nucleic acid binding domain, AA-tRNA synthetase-type; Replication protein A, C-terminal [Interproscan].


Gene families : OG_01_0003292 (OrthoFinder) Phylogenetic Tree(s): OG0003292_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0012s0105.1
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cre02.g100000 30785704 Cell cycle.mitosis and meiosis.meiotic recombination.DNA... 0.04 OrthoFinder
Cz03g08010.t1 No alias Replication protein A, C-terminal [Interproscan]. 0.02 OrthoFinder
Cz03g08020.t1 No alias OB-fold nucleic acid binding domain, AA-tRNA... 0.02 OrthoFinder
Sro461_g147680.1 Contig3552.g27422 Replication protein A 32 kDa subunit 0.02 OrthoFinder
XM_002502895.1 MICPUN_101095, 101095 Replication protein A, C-terminal; OB-fold nucleic acid... 0.02 OrthoFinder
XM_003058768.1 MicpuC2_57959, 57959 OB-fold nucleic acid binding domain, AA-tRNA... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004146 dihydrofolate reductase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
BP GO:0006575 cellular modified amino acid metabolic process IEP Enrichment
BP GO:0006760 folic acid-containing compound metabolic process IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0016073 snRNA metabolic process IEP Enrichment
BP GO:0016180 snRNA processing IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
BP GO:0030099 myeloid cell differentiation IEP Enrichment
BP GO:0030154 cell differentiation IEP Enrichment
BP GO:0030218 erythrocyte differentiation IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032502 developmental process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034472 snRNA 3'-end processing IEP Enrichment
BP GO:0034477 U6 snRNA 3'-end processing IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Enrichment
BP GO:0043628 ncRNA 3'-end processing IEP Enrichment
BP GO:0046653 tetrahydrofolate metabolic process IEP Enrichment
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Enrichment
BP GO:0048869 cellular developmental process IEP Enrichment
MF GO:0051011 microtubule minus-end binding IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR014892 RPA_C 169 294
IPR004365 NA-bd_OB_tRNA 77 151
No external refs found!