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  5. Vocar.0011s0268.1

Vocar.0011s0268.1 (32895339)


Aliases : 32895339

Description : Chaperonin Cpn60/TCP-1 family [Interproscan].


Gene families : OG_01_0003436 (OrthoFinder) Phylogenetic Tree(s): OG0003436_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0011s0268.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020903.30 tig00020903_g15096.t1 Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.02 OrthoFinder
Cre09.g416750 30781340, CCT2 Cytoskeleton.actin and tubulin folding.CCT chaperonin... 0.08 OrthoFinder
Cz12g27040.t1 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.08 OrthoFinder
Dusal.0437s00014.1 33198276 Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.02 OrthoFinder
EOD03984 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.07 OrthoFinder
EOD34861 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.08 OrthoFinder
OT_08G02610.1 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.05 OrthoFinder
Sro2362_g324860.1 Contig1769.g15640 Thermosome subunit beta (Fragment) 0.09 OrthoFinder
TP04G07770.1 No alias Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.03 OrthoFinder
XM_002508232.1 MICPUN_108805, 108805 Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.06 OrthoFinder
XM_003058918.1 MicpuC2_45559, 45559 Chaperonin Cpn60/TCP-1 family [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000191.1_cds_GFH08872.1_3349 HaLaN_03911, GFH08872 T-complex 1 subunit beta 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004190 aspartic-type endopeptidase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005092 GDP-dissociation inhibitor activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005681 spliceosomal complex IEP Enrichment
CC GO:0005856 cytoskeleton IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0007264 small GTPase mediated signal transduction IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
MF GO:0070001 aspartic-type peptidase activity IEP Enrichment
MF GO:0070008 serine-type exopeptidase activity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR002423 Cpn60/TCP-1 33 522
No external refs found!