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  5. Vocar.0011s0260.1

Vocar.0011s0260.1 (32895194)


Aliases : 32895194

Description : ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain [Interproscan].


Gene families : OG_01_0000083 (OrthoFinder) Phylogenetic Tree(s): OG0000083_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0011s0260.1
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
Cre09.g398550 30781371 Cell division control protein 48 homolog C... 0.02 OrthoFinder
PTI_10G03270.1 No alias ATPase, AAA-type, core; Vps4 oligomerisation, C-terminal... 0.02 OrthoFinder
Sro1493_g277320.1 Contig1998.g17101 Metalloprotease FTSH 0.02 OrthoFinder
Vocar.0021s0058.1 32896069 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499724.1_8677 KAA8499724 Cell division cycle protein 48-like 0.02 OrthoFinder
lcl|VRMN01000004.1_cds_KAA8495179.1_3709 KAA8495179 Nuclear valosin-containing protein-like 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0007034 vacuolar transport IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 618 674
IPR003959 ATPase_AAA_core 807 949
IPR041569 AAA_lid_3 680 710
IPR041569 AAA_lid_3 972 1017
No external refs found!