1. Home
  2. Species
  3. Volvox carteri
  4. Sequence
  5. Vocar.0009s0130.1

Vocar.0009s0130.1 (32893357)


Aliases : 32893357

Description : RNA-binding S4 domain; Pseudouridine synthase, RsuA/RluA [Interproscan].


Gene families : OG_01_0000056 (OrthoFinder) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0009s0130.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
Cz01g08160.t1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
Cz16g04140.t1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.03 OrthoFinder
EOD37634 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.04 OrthoFinder
OT_13G01910.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold217.3 217.3 RNA polymerase sigma-70 region 2; RNA polymerase... 0.02 OrthoFinder
Transcript_contig_82236 82236 Hypothetical protein 0.02 OrthoFinder
XM_002503232.1 MICPUN_101067, 101067 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006006 glucose metabolic process IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Enrichment
BP GO:0015693 magnesium ion transport IEP Enrichment
MF GO:0016706 2-oxoglutarate-dependent dioxygenase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
MF GO:0031406 carboxylic acid binding IEP Enrichment
MF GO:0031418 L-ascorbic acid binding IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
InterPro domains Description Start Stop
IPR006145 PsdUridine_synth_RsuA/RluA 335 455
IPR002942 S4_RNA-bd 97 129
No external refs found!