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  5. Vocar.0009s0027.1

Vocar.0009s0027.1 (32893340)


Aliases : 32893340

Description : rRNA-processing arch domain; ATP-dependent RNA helicase Ski2, C-terminal; Helicase, C-terminal; DEAD/DEAH box helicase domain [Interproscan].


Gene families : OG_01_0000182 (OrthoFinder) Phylogenetic Tree(s): OG0000182_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0009s0027.1
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020723.108 tig00020723_g13518.t1 RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder
Cre02.g117900 30785394 RNA processing.RNA decay.exosome complex.associated... 0.02 OrthoFinder
Cz02g30020.t1 No alias rRNA-processing arch domain; Helicase, C-terminal;... 0.02 OrthoFinder
Cz08g28230.t1 No alias rRNA-processing arch domain; Helicase, C-terminal;... 0.02 OrthoFinder
EOD08792 No alias Helicase, C-terminal; rRNA-processing arch domain;... 0.02 OrthoFinder
OT_06G03030.1 No alias ATP-dependent RNA helicase Ski2, C-terminal; Helicase,... 0.02 OrthoFinder
PTI_28G01510.1 No alias ATP-dependent RNA helicase Ski2, C-terminal; Helicase,... 0.03 OrthoFinder
Sro345_g122480.1 Contig2266.g18807 Viralicidic activity 2-like 2 0.02 OrthoFinder
XM_002500240.1 MICPUN_78446, 78446 Helicase, C-terminal; ATP-dependent RNA helicase Ski2,... 0.02 OrthoFinder
XM_002506163.1 MICPUN_88392, 88392 ATP-dependent RNA helicase Ski2, C-terminal;... 0.02 OrthoFinder
XM_003061861.1 MicpuC2_44758, 44758 rRNA-processing arch domain; Helicase, C-terminal;... 0.02 OrthoFinder
lcl|BLLF01009432.1_cds_GFH33722.1_28199 HaLaN_33132, GFH33722 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000016.1_cds_KAA8491098.1_9855 KAA8491098 Superkiller viralicidic activity 2-like 2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000428 DNA-directed RNA polymerase complex IEP Enrichment
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003856 3-dehydroquinate synthase activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004143 diacylglycerol kinase activity IEP Enrichment
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005666 RNA polymerase III complex IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006006 glucose metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006383 transcription by RNA polymerase III IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Enrichment
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0016838 carbon-oxygen lyase activity, acting on phosphates IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0019104 DNA N-glycosylase activity IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
CC GO:0030880 RNA polymerase complex IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
CC GO:0042575 DNA polymerase complex IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043625 delta DNA polymerase complex IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
CC GO:0140535 intracellular protein-containing complex IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
CC GO:1990234 transferase complex IEP Enrichment
InterPro domains Description Start Stop
IPR012961 Ski2_C 915 1098
IPR025696 rRNA_proc-arch_dom 542 887
IPR001650 Helicase_C 370 488
IPR011545 DEAD/DEAH_box_helicase_dom 92 238
No external refs found!