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  5. Vocar.0008s0078.1

Vocar.0008s0078.1 (32897195)


Aliases : 32897195

Description : LSM domain, eukaryotic/archaea-type [Interproscan].


Gene families : OG_01_0002761 (OrthoFinder) Phylogenetic Tree(s): OG0002761_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0008s0078.1
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020563.151 tig00020563_g11353.t1 RNA processing.RNA splicing.U1/U2/U4/U5-associated Sm... 0.02 OrthoFinder
Dusal.0122s00015.1 33203032 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.03 OrthoFinder
OT_14G01220.1 No alias LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
Sro194_g083010.1 Contig237.g2896 Small nuclear ribonucleoprotein E 0.02 OrthoFinder
Sro194_g083060.1 Contig237.g2901 Small nuclear ribonucleoprotein E 0.02 OrthoFinder
XM_002505542.1 MICPUN_63767, 63767 LSM domain, eukaryotic/archaea-type [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000029.1_cds_PRW05797.1_6086 PRW05797 Small nuclear ribonucleo E 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0003779 actin binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
CC GO:0005849 mRNA cleavage factor complex IEP Enrichment
BP GO:0006378 mRNA polyadenylation IEP Enrichment
CC GO:0016272 prefoldin complex IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
BP GO:0031123 RNA 3'-end processing IEP Enrichment
BP GO:0031124 mRNA 3'-end processing IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0043631 RNA polyadenylation IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
CC GO:0072546 EMC complex IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP Enrichment
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 18 83
No external refs found!