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  5. Vocar.0007s0405.1

Vocar.0007s0405.1 (32888249)


Aliases : 32888249

Description : C4-type zinc-finger of DNA polymerase delta; DNA-directed DNA polymerase, family B, multifunctional domain; DNA-directed DNA polymerase, family B, exonuclease domain [Interproscan].


Gene families : OG_01_0001531 (OrthoFinder) Phylogenetic Tree(s): OG0001531_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0007s0405.1
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001545.7 tig00001545_g9337.t1 Cell cycle.interphase.DNA replication.elongation.DNA... 0.02 OrthoFinder
Cre01.g015250 30788505 Cell cycle.interphase.DNA replication.elongation.DNA... 0.02 OrthoFinder
Cz03g38170.t1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.02 OrthoFinder
EOD17546 No alias Putative DNA polymerase POLD1 [Ensembl]. 0.02 OrthoFinder
PTI_12G00450.1 No alias DNA-directed DNA polymerase, family B, multifunctional... 0.01 OrthoFinder
Sro278_g106640.1 Contig1952.g16779 Polymerase delta catalytic subunit 0.02 OrthoFinder
Transcript_contig_55357 55357 C4-type zinc-finger of DNA polymerase delta;... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004531 deoxyribonuclease II activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0016889 endodeoxyribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
InterPro domains Description Start Stop
IPR025687 Znf-C4pol 999 1071
IPR006133 DNA-dir_DNA_pol_B_exonuc 119 462
IPR006134 DNA-dir_DNA_pol_B_multi_dom 526 960
No external refs found!