Vocar.0007s0376.1 (32887918)


Aliases : 32887918

Description : Cleavage stimulation factor subunit 2, hinge domain; RNA recognition motif domain; Transcription termination and cleavage factor, C-terminal domain [Interproscan].


Gene families : OG_01_0000048 (OrthoFinder) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0007s0376.1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Cz07g27210.t1 No alias RNA recognition motif domain; Cleavage stimulation... 0.02 OrthoFinder
Cz08g24230.t1 No alias RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
Cz17g16110.t1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Dusal.0028s00033.1 33198481 RNA recognition motif domain [Interproscan]. 0.04 OrthoFinder
PTI_05G02190.1 No alias RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Sro1655_g289020.1 Contig2908.g23148 Stimulation factor subunit 2 tau variant 0.01 OrthoFinder
SymbC1.scaffold3449.2 3449.2 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Vocar.0009s0275.1 32893396 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
XM_002506682.1 MICPUN_64827, 64827 Cleavage stimulation factor subunit 2, hinge domain;... 0.02 OrthoFinder
lcl|BLLF01000187.1_cds_GFH08821.1_3298 HaLaN_03852, GFH08821 RRM domain-containing protein 0.02 OrthoFinder
lcl|BLLF01003010.1_cds_GFH26067.1_20544 HaLaN_24152, GFH26067 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0031124 mRNA 3'-end processing IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0004143 diacylglycerol kinase activity IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0006914 autophagy IEP Enrichment
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Enrichment
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Enrichment
BP GO:0008156 negative regulation of DNA replication IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
CC GO:0042575 DNA polymerase complex IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0043625 delta DNA polymerase complex IEP Enrichment
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0048478 replication fork protection IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
BP GO:0051641 cellular localization IEP Enrichment
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Enrichment
BP GO:0061919 process utilizing autophagic mechanism IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 78
IPR026896 CSTF_C 509 544
IPR025742 CSTF2_hinge 227 280
No external refs found!