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  5. Vocar.0006s0459.1

Vocar.0006s0459.1 (32894188)


Aliases : 32894188

Description : WD40 repeat; Histone-binding protein RBBP4, N-terminal [Interproscan].


Gene families : OG_01_0003117 (OrthoFinder) Phylogenetic Tree(s): OG0003117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0006s0459.1
Cluster HCCA: Cluster_12

Target Alias Description ECC score Gene Family Method Actions
Cre12.g523200 30792941 Chromatin organisation.histone modifications.histone... 0.04 OrthoFinder
Cz05g15140.t1 No alias WD40 repeat; Histone-binding protein RBBP4, N-terminal... 0.02 OrthoFinder
OT_12G00120.1 No alias Histone-binding protein RBBP4, N-terminal; WD40 repeat;... 0.04 OrthoFinder
Sro1_g000700.1 Contig3007.g23985 Probable histone-binding protein lin-53 0.02 OrthoFinder
XM_002504862.1 MICPUN_86547, 86547 NURF complex component 0.03 OrthoFinder
XM_003060655.1 MicpuC2_49651, 49651 NURF complex component 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0001401 SAM complex IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
CC GO:0005742 mitochondrial outer membrane translocase complex IEP Enrichment
BP GO:0006333 chromatin assembly or disassembly IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0010564 regulation of cell cycle process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
CC GO:0030915 Smc5-Smc6 complex IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032954 regulation of cytokinetic process IEP Enrichment
BP GO:0032955 regulation of division septum assembly IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0044087 regulation of cellular component biogenesis IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0048878 chemical homeostasis IEP Enrichment
BP GO:0050801 ion homeostasis IEP Enrichment
BP GO:0051301 cell division IEP Enrichment
BP GO:0055065 metal ion homeostasis IEP Enrichment
BP GO:0055070 copper ion homeostasis IEP Enrichment
BP GO:0055076 transition metal ion homeostasis IEP Enrichment
BP GO:0055080 cation homeostasis IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0098771 inorganic ion homeostasis IEP Enrichment
CC GO:0098798 mitochondrial protein-containing complex IEP Enrichment
CC GO:0098799 outer mitochondrial membrane protein complex IEP Enrichment
CC GO:0106068 SUMO ligase complex IEP Enrichment
BP GO:1901891 regulation of cell septum assembly IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 272 301
IPR001680 WD40_repeat 172 207
IPR001680 WD40_repeat 368 403
IPR001680 WD40_repeat 309 347
IPR022052 Histone-bd_RBBP4_N 19 88
No external refs found!