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  5. Vocar.0006s0298.1

Vocar.0006s0298.1 (32894289)


Aliases : 32894289

Description : DBP10, C-terminal; DEAD/DEAH box helicase domain; Helicase, C-terminal [Interproscan].


Gene families : OG_01_0002520 (OrthoFinder) Phylogenetic Tree(s): OG0002520_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0006s0298.1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
Cre12.g513701 30791778 DEAD-box ATP-dependent RNA helicase 29 OS=Oryza sativa... 0.03 OrthoFinder
Sro1505_g278170.1 Contig474.g6439 Dependent RNA helicase 0.01 OrthoFinder
Transcript_contig_54936 54936 Helicase, C-terminal; DBP10, C-terminal; DEAD/DEAH box... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003724 RNA helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0032259 methylation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 69 228
IPR001650 Helicase_C 265 375
IPR012541 DBP10_C 751 815
No external refs found!