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  5. Vocar.0006s0265.1

Vocar.0006s0265.1 (32893973)


Aliases : 32893973

Description : Ribosomal protein S17e [Interproscan].


Gene families : OG_01_0002798 (OrthoFinder) Phylogenetic Tree(s): OG0002798_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0006s0265.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cre12.g498250 30793608, RPS17 Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 OrthoFinder
Cz02g24100.t1 No alias Ribosomal protein S17e [Interproscan]. 0.16 OrthoFinder
Dusal.0462s00007.1 33197488 Ribosomal protein S17e [Interproscan]. 0.06 OrthoFinder
EOD21818 No alias Ribosomal protein S17e [Interproscan]. 0.03 OrthoFinder
EOD28935 No alias Putative 40S ribosomal protein S17 [Ensembl]. 0.02 OrthoFinder
OT_04G05050.1 No alias Ribosomal protein S17e [Interproscan]. 0.12 OrthoFinder
PTI_05G01130.1 No alias Ribosomal protein S17e [Interproscan]. 0.13 OrthoFinder
Sro13_g009690.1 Contig337.g4510 40S ribosomal protein S17 0.23 OrthoFinder
SymbC1.scaffold3580.6 3580.6 Ribosomal protein S17e [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold3580.7 3580.7 Ribosomal protein S17e [Interproscan]. 0.04 OrthoFinder
TP16G00420.1 No alias Ribosomal protein S17e [Interproscan]. 0.22 OrthoFinder
Transcript_contig_80128 80128 Ribosomal protein S17e [Interproscan]. 0.02 OrthoFinder
XM_002504075.1 MICPUN_76945, 76945 Ribosomal protein S17e [Interproscan]. 0.19 OrthoFinder
XM_003059599.1 MicpuC2_34073, 34073 Ribosomal protein S17e [Interproscan]. 0.08 OrthoFinder
lcl|BLLF01003084.1_cds_GFH26294.1_20771 HaLaN_24421, GFH26294 Ribosomal protein S17e [Interproscan]. 0.07 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56596.1_9574 PRW56596 40S ribosomal S17 isoform B 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56597.1_9573 PRW56597 40S ribosomal S17 isoform A 0.15 OrthoFinder
lcl|VRMN01000015.1_cds_KAA8491192.1_5820 KAA8491192 40S ribosomal protein S17 0.08 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
CC GO:0000814 ESCRT II complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
InterPro domains Description Start Stop
IPR001210 Ribosomal_S17e 1 121
No external refs found!