Vocar.0006s0197.1 (32894370)


Aliases : 32894370

Description : Histone H2A/H2B/H3 [Interproscan].


Gene families : OG_01_0000102 (OrthoFinder) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0006s0197.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
Cre06.g265400 30779197 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g268100 30778559, HTB10 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g268250 30778807, HTB9 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g274750 30779303 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g276900 30779728, HTB24 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre12.g504550 30792324 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre12.g506200 30793175 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre13.g570050 30784307, HTB2 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre17.g713450 30782606 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cz02g02060.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Cz07g08190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
EOD16252 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
EOD17479 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
EOD18484 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
EOD26824 No alias Putative histone H2B [Ensembl]. 0.02 OrthoFinder
EOD34128 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
EOD41189 No alias Putative histone H2B [Ensembl]. 0.02 OrthoFinder
PTI_06G02120.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Sro1535_g280540.1 Contig3021.g24091 Histone H2B 0.03 OrthoFinder
Sro228_g092710.1 Contig1235.g11585 Histone H2B 0.02 OrthoFinder
Sro470_g149440.1 Contig850.g9338 Histone H2B 0.02 OrthoFinder
XM_003058473.1 MicpuC2_58125, 58125 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8498015.1_6968 KAA8498015 Histone H2B type 1-M 0.02 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0004751 ribose-5-phosphate isomerase activity IEP Enrichment
BP GO:0006417 regulation of translation IEP Enrichment
BP GO:0006448 regulation of translational elongation IEP Enrichment
BP GO:0006449 regulation of translational termination IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009052 pentose-phosphate shunt, non-oxidative branch IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
CC GO:0009349 riboflavin synthase complex IEP Enrichment
BP GO:0009891 positive regulation of biosynthetic process IEP Enrichment
BP GO:0009893 positive regulation of metabolic process IEP Enrichment
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
BP GO:0010628 positive regulation of gene expression IEP Enrichment
MF GO:0016860 intramolecular oxidoreductase activity IEP Enrichment
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Enrichment
BP GO:0031325 positive regulation of cellular metabolic process IEP Enrichment
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032268 regulation of cellular protein metabolic process IEP Enrichment
BP GO:0032270 positive regulation of cellular protein metabolic process IEP Enrichment
BP GO:0034248 regulation of cellular amide metabolic process IEP Enrichment
BP GO:0034250 positive regulation of cellular amide metabolic process IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
MF GO:0043021 ribonucleoprotein complex binding IEP Enrichment
MF GO:0043022 ribosome binding IEP Enrichment
BP GO:0043243 positive regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0045727 positive regulation of translation IEP Enrichment
BP GO:0045901 positive regulation of translational elongation IEP Enrichment
BP GO:0045905 positive regulation of translational termination IEP Enrichment
BP GO:0048518 positive regulation of biological process IEP Enrichment
BP GO:0048522 positive regulation of cellular process IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051130 positive regulation of cellular component organization IEP Enrichment
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051246 regulation of protein metabolic process IEP Enrichment
BP GO:0051247 positive regulation of protein metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 130
No external refs found!