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  5. Vocar.0006s0148.1

Vocar.0006s0148.1 (32894324)


Aliases : 32894324

Description : RNA-binding S4 domain; Pseudouridine synthase, RsuA/RluA [Interproscan].


Gene families : OG_01_0000212 (OrthoFinder) Phylogenetic Tree(s): OG0000212_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0006s0148.1
Cluster HCCA: Cluster_123

Target Alias Description ECC score Gene Family Method Actions
Cz13g08010.t1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
Sro442_g143800.1 Contig509.g6751 Ribosomal small subunit pseudouridine synthase A 0.03 OrthoFinder
TP06G05090.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
TP07G01290.1 No alias Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
XM_003062138.1 MicpuC2_6566, 6566 Pseudouridine synthase, RsuA/RluA [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000013.1_cds_PRW44607.1_2322 PRW44607 Ribosomal large subunit pseudouridine synthase B 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0009451 RNA modification IEA Interproscan
MF GO:0009982 pseudouridine synthase activity IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003725 double-stranded RNA binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005813 centrosome IEP Enrichment
CC GO:0005815 microtubule organizing center IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006904 vesicle docking involved in exocytosis IEP Enrichment
BP GO:0007098 centrosome cycle IEP Enrichment
BP GO:0008608 attachment of spindle microtubules to kinetochore IEP Enrichment
MF GO:0016409 palmitoyltransferase activity IEP Enrichment
MF GO:0019825 oxygen binding IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0022406 membrane docking IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
BP GO:0031023 microtubule organizing center organization IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0048278 vesicle docking IEP Enrichment
BP GO:0051315 attachment of mitotic spindle microtubules to kinetochore IEP Enrichment
BP GO:0051640 organelle localization IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
BP GO:0140029 exocytic process IEP Enrichment
BP GO:0140056 organelle localization by membrane tethering IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 77 118
IPR006145 PsdUridine_synth_RsuA/RluA 212 353
No external refs found!