Vocar.0006s0140.1 (32894315)

Aliases : 32894315

Description : Ribosomal protein L13e [Interproscan].

Gene families : OG_01_0002835 (OrthoFinder) Phylogenetic Tree(s): OG0002835_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0006s0140.1
Cluster	HCCA: Cluster_65

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020629.36	tig00020629_g12358.t1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.06	OrthoFinder
Cre14.g630100	30776357, RPL13	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder
Cz15g22130.t1	No alias	Ribosomal protein L13e; Tetratricopeptide repeat [Interproscan].	0.03	OrthoFinder
EOD29349	No alias	60S ribosomal protein L13 [Ensembl].	0.09	OrthoFinder
OT_05G05020.1	No alias	Ribosomal protein L13e [Interproscan].	0.07	OrthoFinder
PTI_20G02450.1	No alias	Ribosomal protein L13e [Interproscan].	0.07	OrthoFinder
Sro307_g113390.1	Contig2839.g22809	60S ribosomal protein L13-1	0.07	OrthoFinder
TP04G08470.1	No alias	Ribosomal protein L13e [Interproscan].	0.09	OrthoFinder
XM_002502479.1	MICPUN_90780, 90780	Ribosomal protein L13e [Interproscan].	0.06	OrthoFinder
XM_003056868.1	MicpuC2_62462, 62462	Ribosomal protein L13e [Interproscan].	0.03	OrthoFinder
lcl\|BLLF01001412.1_cds_GFH19137.1_13614	HaLaN_16038, GFH19137	60S ribosomal protein L13	0.06	OrthoFinder
lcl\|BLLF01008736.1_cds_GFH33502.1_27979	HaLaN_32883, GFH33502	60S ribosomal protein L13	0.02	OrthoFinder
lcl\|VRMN01000011.1_cds_KAA8491921.1_4929	KAA8491921	60S ribosomal protein L13-1	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Enrichment
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	Enrichment
MF	GO:0005048	signal sequence binding	IEP	Enrichment
CC	GO:0005786	signal recognition particle, endoplasmic reticulum targeting	IEP	Enrichment
BP	GO:0006605	protein targeting	IEP	Enrichment
BP	GO:0006612	protein targeting to membrane	IEP	Enrichment
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Enrichment
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Enrichment
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Enrichment
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	Enrichment
MF	GO:0008097	5S rRNA binding	IEP	Enrichment
MF	GO:0008312	7S RNA binding	IEP	Enrichment
CC	GO:0015934	large ribosomal subunit	IEP	Enrichment
BP	GO:0016485	protein processing	IEP	Enrichment
MF	GO:0016830	carbon-carbon lyase activity	IEP	Enrichment
MF	GO:0016831	carboxy-lyase activity	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
MF	GO:0030942	endoplasmic reticulum signal peptide binding	IEP	Enrichment
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Enrichment
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Enrichment
MF	GO:0033218	amide binding	IEP	Enrichment
BP	GO:0033365	protein localization to organelle	IEP	Enrichment
BP	GO:0034613	cellular protein localization	IEP	Enrichment
MF	GO:0042277	peptide binding	IEP	Enrichment
CC	GO:0044391	ribosomal subunit	IEP	Enrichment
BP	GO:0045047	protein targeting to ER	IEP	Enrichment
CC	GO:0048500	signal recognition particle	IEP	Enrichment
BP	GO:0051604	protein maturation	IEP	Enrichment
BP	GO:0051668	localization within membrane	IEP	Enrichment
BP	GO:0070727	cellular macromolecule localization	IEP	Enrichment
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Enrichment
BP	GO:0071586	CAAX-box protein processing	IEP	Enrichment
BP	GO:0072594	establishment of protein localization to organelle	IEP	Enrichment
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Enrichment
BP	GO:0072657	protein localization to membrane	IEP	Enrichment
BP	GO:0090150	establishment of protein localization to membrane	IEP	Enrichment
CC	GO:1990904	ribonucleoprotein complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001380	Ribosomal_L13e	7	196

External Links

No external refs found!

Vocar.0006s0140.1 (32894315)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation