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  5. Vocar.0006s0105.1

Vocar.0006s0105.1 (32893899)


Aliases : 32893899

Description : ABC transporter-like; ABC-2 type transporter; Plant PDR ABC transporter associated [Interproscan].


Gene families : OG_01_0000300 (OrthoFinder) Phylogenetic Tree(s): OG0000300_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0006s0105.1
Cluster HCCA: Cluster_7

Target Alias Description ECC score Gene Family Method Actions
Cre04.g224500 30791046 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
Cz02g09140.t1 No alias Plant PDR ABC transporter associated; ABC-2 type... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 820 974
IPR003439 ABC_transporter-like_ATP-bd 114 318
IPR013525 ABC_2_trans 1147 1359
IPR013581 PDR_assoc 603 651
No external refs found!