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Aliases : 32894081
Description : Histone H2A/H2B/H3 [Interproscan].
Gene families : OG_01_0000015 (OrthoFinder) Phylogenetic Tree(s): OG0000015_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Vocar.0006s0042.1 | |
| Cluster | HCCA: Cluster_110 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00020801.48 | tig00020801_g13931.t1 | Histone H3.3 OS=Vitis vinifera | 0.01 | OrthoFinder | |
| Cre06.g264650 | 30779911, HTR27 | Chromatin organisation.histones.H3-type histone | 0.02 | OrthoFinder | |
| Cre06.g265000 | 30778874 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre06.g265250 | 30779294 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre06.g266650 | 30779741 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre06.g267950 | 30779543, HTR10 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre06.g268350 | 30778762, HTR9 | Chromatin organisation.histones.H3-type histone | 0.02 | OrthoFinder | |
| Cre06.g274000 | 30779747, HTR7 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre06.g274101 | 30779608 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre06.g274350 | 30778588, HTR29 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre06.g274850 | 30778497 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre06.g275750 | 30779137 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre06.g276600 | 30779595 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre06.g276850 | 30778983, HTR24 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre12.g504650 | 30791932 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre12.g504800 | 30793536, HTR16 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre12.g505500 | 30793498, HTR17 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre12.g506300 | 30792290, HTR18 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre12.g506500 | 30792666, HTR35 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre13.g569950 | 30784075, HTR2 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre16.g661450 | 30777754, HTV3 | Cell cycle.mitosis and meiosis.chromosome... | 0.03 | OrthoFinder | |
| Cre17.g708150 | 30782647, HTR36 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre17.g708700 | 30782453, HTR20 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cre17.g709050 | 30782593, HTR3 | Chromatin organisation.histones.H3-type histone | 0.03 | OrthoFinder | |
| Cz05g04150.t1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| Cz07g08150.t1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.03 | OrthoFinder | |
| Cz08g27160.t1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| Cz13g04210.t1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.03 | OrthoFinder | |
| Cz18g11080.t1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| Dusal.0093s00033.1 | 33185318 | Histone H2A/H2B/H3 [Interproscan]. | 0.01 | OrthoFinder | |
| Dusal.0194s00024.1 | 33199901 | Histone H2A/H2B/H3 [Interproscan]. | 0.01 | OrthoFinder | |
| Dusal.1067s00005.1 | 33188990 | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| Dusal.1079s00002.1 | 33193518 | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| EOD22942 | No alias | Putative histone H3 [Ensembl]. | 0.03 | OrthoFinder | |
| EOD31711 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.03 | OrthoFinder | |
| EOD33509 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.03 | OrthoFinder | |
| EOD34125 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.01 | OrthoFinder | |
| OT_11G02230.1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.03 | OrthoFinder | |
| PTI_06G03830.1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| PTI_06G03900.1 | No alias | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| Sro228_g092790.1 | Contig1235.g11593 | Histone H3 | 0.01 | OrthoFinder | |
| Sro2314_g322910.1 | Contig3467.g26905 | Histone H3 | 0.02 | OrthoFinder | |
| Sro348_g123190.1 | Contig2346.g19285 | Histone H3 | 0.02 | OrthoFinder | |
| Sro69_g038380.1 | Contig4677.g34747 | Histone H3 | 0.02 | OrthoFinder | |
| Sro6_g005390.1 | Contig175.g2044 | Histone H3 | 0.02 | OrthoFinder | |
| Vocar.0028s0150.1 | 32895676 | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| XM_003059175.1 | MicpuC2_27286, 27286 | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| XM_003061662.1 | MicpuC2_48264, 48264 | Histone H2A/H2B/H3 [Interproscan]. | 0.02 | OrthoFinder | |
| XM_003061708.1 | MicpuC2_48289, 48289 | Histone H3 | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000786 | nucleosome | IEA | Interproscan |
| MF | GO:0003677 | DNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEP | Enrichment |
| MF | GO:0003725 | double-stranded RNA binding | IEP | Enrichment |
| MF | GO:0003746 | translation elongation factor activity | IEP | Enrichment |
| MF | GO:0003747 | translation release factor activity | IEP | Enrichment |
| BP | GO:0006415 | translational termination | IEP | Enrichment |
| BP | GO:0006417 | regulation of translation | IEP | Enrichment |
| BP | GO:0006448 | regulation of translational elongation | IEP | Enrichment |
| BP | GO:0006449 | regulation of translational termination | IEP | Enrichment |
| BP | GO:0006771 | riboflavin metabolic process | IEP | Enrichment |
| MF | GO:0008079 | translation termination factor activity | IEP | Enrichment |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Enrichment |
| BP | GO:0009231 | riboflavin biosynthetic process | IEP | Enrichment |
| CC | GO:0009349 | riboflavin synthase complex | IEP | Enrichment |
| BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Enrichment |
| BP | GO:0009893 | positive regulation of metabolic process | IEP | Enrichment |
| BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | Enrichment |
| BP | GO:0010608 | posttranscriptional regulation of gene expression | IEP | Enrichment |
| BP | GO:0010628 | positive regulation of gene expression | IEP | Enrichment |
| CC | GO:0015934 | large ribosomal subunit | IEP | Enrichment |
| BP | GO:0016043 | cellular component organization | IEP | Enrichment |
| BP | GO:0016226 | iron-sulfur cluster assembly | IEP | Enrichment |
| CC | GO:0016469 | proton-transporting two-sector ATPase complex | IEP | Enrichment |
| CC | GO:0016471 | vacuolar proton-transporting V-type ATPase complex | IEP | Enrichment |
| BP | GO:0022411 | cellular component disassembly | IEP | Enrichment |
| BP | GO:0022607 | cellular component assembly | IEP | Enrichment |
| BP | GO:0031163 | metallo-sulfur cluster assembly | IEP | Enrichment |
| BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | Enrichment |
| BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0032268 | regulation of cellular protein metabolic process | IEP | Enrichment |
| BP | GO:0032270 | positive regulation of cellular protein metabolic process | IEP | Enrichment |
| BP | GO:0032984 | protein-containing complex disassembly | IEP | Enrichment |
| CC | GO:0033176 | proton-transporting V-type ATPase complex | IEP | Enrichment |
| BP | GO:0034248 | regulation of cellular amide metabolic process | IEP | Enrichment |
| BP | GO:0034250 | positive regulation of cellular amide metabolic process | IEP | Enrichment |
| BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Enrichment |
| MF | GO:0043021 | ribonucleoprotein complex binding | IEP | Enrichment |
| MF | GO:0043022 | ribosome binding | IEP | Enrichment |
| BP | GO:0043243 | positive regulation of protein-containing complex disassembly | IEP | Enrichment |
| BP | GO:0043244 | regulation of protein-containing complex disassembly | IEP | Enrichment |
| BP | GO:0043624 | cellular protein complex disassembly | IEP | Enrichment |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Enrichment |
| CC | GO:0044391 | ribosomal subunit | IEP | Enrichment |
| MF | GO:0044877 | protein-containing complex binding | IEP | Enrichment |
| MF | GO:0045182 | translation regulator activity | IEP | Enrichment |
| BP | GO:0045727 | positive regulation of translation | IEP | Enrichment |
| BP | GO:0045901 | positive regulation of translational elongation | IEP | Enrichment |
| BP | GO:0045905 | positive regulation of translational termination | IEP | Enrichment |
| BP | GO:0048518 | positive regulation of biological process | IEP | Enrichment |
| BP | GO:0048522 | positive regulation of cellular process | IEP | Enrichment |
| BP | GO:0048878 | chemical homeostasis | IEP | Enrichment |
| BP | GO:0050801 | ion homeostasis | IEP | Enrichment |
| BP | GO:0051128 | regulation of cellular component organization | IEP | Enrichment |
| BP | GO:0051130 | positive regulation of cellular component organization | IEP | Enrichment |
| BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0051246 | regulation of protein metabolic process | IEP | Enrichment |
| BP | GO:0051247 | positive regulation of protein metabolic process | IEP | Enrichment |
| BP | GO:0055065 | metal ion homeostasis | IEP | Enrichment |
| BP | GO:0055070 | copper ion homeostasis | IEP | Enrichment |
| BP | GO:0055076 | transition metal ion homeostasis | IEP | Enrichment |
| BP | GO:0055080 | cation homeostasis | IEP | Enrichment |
| BP | GO:0070070 | proton-transporting V-type ATPase complex assembly | IEP | Enrichment |
| BP | GO:0070071 | proton-transporting two-sector ATPase complex assembly | IEP | Enrichment |
| BP | GO:0070072 | vacuolar proton-transporting V-type ATPase complex assembly | IEP | Enrichment |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Enrichment |
| MF | GO:0090079 | translation regulator activity, nucleic acid binding | IEP | Enrichment |
| BP | GO:0098771 | inorganic ion homeostasis | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR007125 | Histone_H2A/H2B/H3 | 1 | 131 |
| No external refs found! |