Vocar.0005s0225.1 (32883971)


Aliases : 32883971

Description : Formamidopyrimidine-DNA glycosylase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding [Interproscan].


Gene families : OG_01_0003087 (OrthoFinder) Phylogenetic Tree(s): OG0003087_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0005s0225.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
lcl|BLLF01000775.1_cds_GFH14858.1_9335 HaLaN_10985, GFH14858 H2TH domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000025.1_cds_PRW20199.1_5716 PRW20199 Formamidopyrimidine-DNA glycosylase isoform X2 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEA Interproscan
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEA Interproscan
BP GO:0006284 base-excision repair IEA Interproscan
BP GO:0006289 nucleotide-excision repair IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
MF GO:0008171 O-methyltransferase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
CC GO:0009521 photosystem IEP Enrichment
CC GO:0009523 photosystem II IEP Enrichment
CC GO:0009654 photosystem II oxygen evolving complex IEP Enrichment
BP GO:0015979 photosynthesis IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0019842 vitamin binding IEP Enrichment
CC GO:0019898 extrinsic component of membrane IEP Enrichment
MF GO:0030170 pyridoxal phosphate binding IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
MF GO:0070279 vitamin B6 binding IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
CC GO:1990204 oxidoreductase complex IEP Enrichment
InterPro domains Description Start Stop
IPR015886 DNA_glyclase/AP_lyase_DNA-bd 161 240
IPR012319 FPG_cat 1 134
No external refs found!