- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Aliases : 32884071
Description : RNA recognition motif domain [Interproscan].
Gene families : OG_01_0000350 (OrthoFinder) Phylogenetic Tree(s): OG0000350_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Vocar.0005s0221.1 | |
| Cluster | HCCA: Cluster_2 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cpa|evm.model.tig00001130.27 | tig00001130_g7257.t1 | Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana | 0.03 | OrthoFinder | |
| Cre10.g428200 | 30790390 | No description available | 0.03 | OrthoFinder | |
| Dusal.0100s00014.1 | 33202467 | RNA recognition motif domain [Interproscan]. | 0.03 | OrthoFinder | |
| Dusal.0281s00004.1 | 33190367 | RNA recognition motif domain [Interproscan]. | 0.03 | OrthoFinder | |
| Dusal.0456s00006.1 | 33199037 | RNA recognition motif domain [Interproscan]. | 0.03 | OrthoFinder | |
| EOD33146 | No alias | RNA recognition motif domain [Interproscan]. | 0.01 | OrthoFinder | |
| TP14G02790.1 | No alias | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
| XM_002507076.1 | MICPUN_51328, 51328 | RNA recognition motif family protein | 0.02 | OrthoFinder | |
| lcl|BLLF01000394.1_cds_GFH11342.1_5819 | HaLaN_06825, GFH11342 | RNA recognition motif domain [Interproscan]. | 0.02 | OrthoFinder | |
| lcl|LHPG02000007.1_cds_PRW57147.1_8765 | PRW57147 | Heterogeneous nuclear ribonucleo s A2 B1 | 0.03 | OrthoFinder | |
| lcl|VRMN01000001.1_cds_KAA8499475.1_8428 | KAA8499475 | DAZ-associated protein 1 | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Enrichment |
| CC | GO:0000228 | nuclear chromosome | IEP | Enrichment |
| BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Enrichment |
| BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Enrichment |
| BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Enrichment |
| MF | GO:0003682 | chromatin binding | IEP | Enrichment |
| MF | GO:0004672 | protein kinase activity | IEP | Enrichment |
| MF | GO:0005096 | GTPase activator activity | IEP | Enrichment |
| MF | GO:0005515 | protein binding | IEP | Enrichment |
| MF | GO:0005524 | ATP binding | IEP | Enrichment |
| CC | GO:0005634 | nucleus | IEP | Enrichment |
| CC | GO:0005681 | spliceosomal complex | IEP | Enrichment |
| CC | GO:0005694 | chromosome | IEP | Enrichment |
| BP | GO:0006325 | chromatin organization | IEP | Enrichment |
| BP | GO:0006338 | chromatin remodeling | IEP | Enrichment |
| BP | GO:0006464 | cellular protein modification process | IEP | Enrichment |
| BP | GO:0006468 | protein phosphorylation | IEP | Enrichment |
| BP | GO:0016043 | cellular component organization | IEP | Enrichment |
| MF | GO:0016301 | kinase activity | IEP | Enrichment |
| BP | GO:0016310 | phosphorylation | IEP | Enrichment |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Enrichment |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Enrichment |
| MF | GO:0017076 | purine nucleotide binding | IEP | Enrichment |
| BP | GO:0019538 | protein metabolic process | IEP | Enrichment |
| MF | GO:0019825 | oxygen binding | IEP | Enrichment |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Enrichment |
| MF | GO:0030695 | GTPase regulator activity | IEP | Enrichment |
| MF | GO:0031491 | nucleosome binding | IEP | Enrichment |
| MF | GO:0032553 | ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Enrichment |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Enrichment |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Enrichment |
| MF | GO:0036094 | small molecule binding | IEP | Enrichment |
| BP | GO:0036211 | protein modification process | IEP | Enrichment |
| BP | GO:0043044 | ATP-dependent chromatin remodeling | IEP | Enrichment |
| MF | GO:0043167 | ion binding | IEP | Enrichment |
| MF | GO:0043168 | anion binding | IEP | Enrichment |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
| CC | GO:0043226 | organelle | IEP | Enrichment |
| CC | GO:0043229 | intracellular organelle | IEP | Enrichment |
| BP | GO:0043412 | macromolecule modification | IEP | Enrichment |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Enrichment |
| MF | GO:0044877 | protein-containing complex binding | IEP | Enrichment |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Enrichment |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Enrichment |
| MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Enrichment |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000504 | RRM_dom | 158 | 205 |
| No external refs found! |