Vocar.0005s0156.1 (32883838)

Aliases : 32883838

Description : RNA recognition motif domain [Interproscan].

Gene families : OG_01_0005231 (OrthoFinder) Phylogenetic Tree(s): OG0005231_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0005s0156.1
Cluster	HCCA: Cluster_15

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00021222.7	tig00021222_g19364.t1	RNA processing.RNA quality control Exon Junction complex...	0.02	OrthoFinder
Cre03.g164950	30788229	RNA processing.RNA quality control Exon Junction complex...	0.04	OrthoFinder
Dusal.0766s00004.1	33188361	RNA recognition motif domain [Interproscan].	0.02	OrthoFinder
lcl\|LHPG02000023.1_cds_PRW20539.1_5429	PRW20539	Serine arginine-rich splicing factor SR45-like	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004418	hydroxymethylbilane synthase activity	IEP	Enrichment
BP	GO:0006397	mRNA processing	IEP	Enrichment
BP	GO:0016071	mRNA metabolic process	IEP	Enrichment
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	Enrichment
BP	GO:0033013	tetrapyrrole metabolic process	IEP	Enrichment
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	87	156

External Links

No external refs found!