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  5. Vocar.0005s0082.1

Vocar.0005s0082.1 (32884001)


Aliases : 32884001

Description : Domain of unknown function DUF1605; Helicase, C-terminal; Helicase-associated domain [Interproscan].


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0005s0082.1
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000113.111 tig00000113_g5693.t1 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00022075.25 tig00022075_g23589.t1 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder
Cre07.g329150 30774611 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 OrthoFinder
Cre07.g349100 30774605 RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder
Cre07.g352251 30775310 ATP-dependent RNA helicase DEAH13 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cz03g11220.t1 No alias Helicase, C-terminal; S1 domain; Helicase-associated... 0.04 OrthoFinder
Cz05g31260.t1 No alias Helicase, C-terminal; Domain of unknown function... 0.05 OrthoFinder
Dusal.0174s00024.1 33196266 Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
EOD05883 No alias ATP-dependent RNA helicase [Ensembl]. 0.02 OrthoFinder
EOD10970 No alias Helicase, C-terminal; Domain of unknown function... 0.01 OrthoFinder
EOD22735 No alias Helicase-associated domain; DEAD/DEAH box helicase... 0.01 OrthoFinder
EOD26794 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
OT_01G03120.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.03 OrthoFinder
OT_05G03840.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
PTI_05G02970.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.04 OrthoFinder
PTI_07G01260.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.01 OrthoFinder
PTI_11G03860.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
Sro4_g003320.1 Contig3815.g29250 Splicing factor ATP-dependent RNA helicase 0.04 OrthoFinder
Sro834_g208730.1 Contig2061.g17675 Splicing factor ATP-dependent RNA helicase 0.02 OrthoFinder
SymbC1.scaffold7362.3 7362.3 AAA+ ATPase domain; Domain of unknown function DUF1605;... 0.01 OrthoFinder
TP13G03460.1 No alias Domain of unknown function DUF1605; Helicase-associated... 0.02 OrthoFinder
Transcript_contig_55987 55987 Helicase-associated domain; Helicase, C-terminal; Domain... 0.01 OrthoFinder
Transcript_contig_67459 67459 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.01 OrthoFinder
Transcript_contig_89480 89480 Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
XM_002501417.1 MICPUN_58037, 58037 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
XM_002502185.1 MICPUN_81845, 81845 Helicase, C-terminal; Helicase-associated domain; Domain... 0.04 OrthoFinder
XM_002508712.1 MICPUN_97967, 97967 Helicase, C-terminal; Helicase-associated domain;... 0.02 OrthoFinder
lcl|BLLF01005212.1_cds_GFH30884.1_25361 HaLaN_29814, GFH30884 RNA helicase 0.02 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60688.1_4603 PRW60688 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.04 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58375.1_7631 PRW58375 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.02 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32898.1_3654 PRW32898 ATP-dependent RNA helicase isoform X1 0.03 OrthoFinder
lcl|VRMN01000010.1_cds_KAA8492270.1_5453 KAA8492270 Putative pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004525 ribonuclease III activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR011709 DUF1605 1290 1381
IPR007502 Helicase-assoc_dom 926 1129
IPR001650 Helicase_C 776 863
No external refs found!