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  5. Vocar.0005s0053.1

Vocar.0005s0053.1 (32884040)


Aliases : 32884040

Description : Histone H2A/H2B/H3 [Interproscan].


Gene families : OG_01_0000102 (OrthoFinder) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0005s0053.1
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Cre01.g062172 30789439, HBV1 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g264900 30779615, HTB13 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g265400 30779197 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g271376 30780144 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g273850 30778673, HTB7 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g274250 30779155 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g274750 30779303 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g275800 30778604 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g276550 30778890, HTB23 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g276900 30779728, HTB24 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre12.g504550 30792324 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre12.g504700 30793271 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre12.g506200 30793175 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre13.g570050 30784307, HTB2 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre13.g590750 30783880, HTB37 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre13.g591200 30784473, HTB38 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre17.g709150 30782749 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g710450 30782433 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g711750 30781954 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g713450 30782606 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g714050 30782614, HTB21 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cz02g02060.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Cz05g04190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Cz07g08190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Cz08g27120.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Cz18g11110.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD16252 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD17479 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD18484 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD26824 No alias Putative histone H2B [Ensembl]. 0.03 OrthoFinder
EOD34128 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
EOD41189 No alias Putative histone H2B [Ensembl]. 0.03 OrthoFinder
OT_08G01920.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
OT_12G00920.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
PTI_06G02120.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
PTI_06G04930.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Sro1535_g280540.1 Contig3021.g24091 Histone H2B 0.02 OrthoFinder
Sro228_g092710.1 Contig1235.g11585 Histone H2B 0.02 OrthoFinder
Sro470_g149440.1 Contig850.g9338 Histone H2B 0.02 OrthoFinder
TP05G07690.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.01 OrthoFinder
XM_003055466.1 MicpuC2_13212, 13212 Histone H2B 0.02 OrthoFinder
XM_003058473.1 MicpuC2_58125, 58125 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
XM_003061989.1 MicpuC2_35705, 35705 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005815 microtubule organizing center IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009143 nucleoside triphosphate catabolic process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP Enrichment
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Enrichment
BP GO:0034453 microtubule anchoring IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044270 cellular nitrogen compound catabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0046700 heterocycle catabolic process IEP Enrichment
MF GO:0047429 nucleoside-triphosphate diphosphatase activity IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
BP GO:1901292 nucleoside phosphate catabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!