Vocar.0004s0107.1 (32889418)

Aliases : 32889418

Description : Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal; Ribosomal protein L5 eukaryotic/L18 archaeal [Interproscan].

Gene families : OG_01_0002830 (OrthoFinder) Phylogenetic Tree(s): OG0002830_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Vocar.0004s0107.1
Cluster	HCCA: Cluster_65

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000194.49	tig00000194_g14777.t1	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder
Cre14.g621450	30776682, RPL5	Protein biosynthesis.cytosolic ribosome.large subunit...	0.15	OrthoFinder
Cz10g29210.t1	No alias	Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal...	0.08	OrthoFinder
Dusal.0029s00017.1	33203768	Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal...	0.05	OrthoFinder
EOD29298	No alias	Ribosomal protein L5 eukaryotic/L18 archaeal,...	0.09	OrthoFinder
EOD40079	No alias	Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal...	0.03	OrthoFinder
OT_15G01250.1	No alias	Ribosomal protein L5 eukaryotic/L18 archaeal,...	0.07	OrthoFinder
PTI_01G05820.1	No alias	Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal...	0.06	OrthoFinder
Sro872_g213940.1	Contig2262.g18776	60S ribosomal protein L5	0.07	OrthoFinder
SymbC1.scaffold1162.12	1162.12	Ribosomal protein L5 eukaryotic/L18 archaeal,...	0.05	OrthoFinder
TP18G00890.1	No alias	Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal...	0.03	OrthoFinder
XM_002501895.1	MICPUN_108173, 108173	Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal...	0.06	OrthoFinder
XM_003057549.1	MicpuC2_49536, 49536	Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal...	0.02	OrthoFinder
lcl\|BLLF01000001.1_cds_GFH05536.1_13	HaLaN_00015, GFH05536	Ribosomal_L18_c domain-containing protein	0.06	OrthoFinder
lcl\|LHPG02000024.1_cds_PRW20400.1_5627	PRW20400	60S ribosomal L5	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008097	5S rRNA binding	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019843	rRNA binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0015934	large ribosomal subunit	IEP	Enrichment
MF	GO:0016835	carbon-oxygen lyase activity	IEP	Enrichment
MF	GO:0016836	hydro-lyase activity	IEP	Enrichment
CC	GO:0030176	integral component of endoplasmic reticulum membrane	IEP	Enrichment
CC	GO:0031227	intrinsic component of endoplasmic reticulum membrane	IEP	Enrichment
CC	GO:0031300	intrinsic component of organelle membrane	IEP	Enrichment
CC	GO:0031301	integral component of organelle membrane	IEP	Enrichment
CC	GO:0044391	ribosomal subunit	IEP	Enrichment
MF	GO:0052855	ADP-dependent NAD(P)H-hydrate dehydratase activity	IEP	Enrichment
CC	GO:1990904	ribonucleoprotein complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005485	Rbsml_L5_euk/L18_arc	14	176
IPR025607	Rbsml_L5e/L18P_C	193	284

External Links

No external refs found!

Vocar.0004s0107.1 (32889418)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation