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  5. Vocar.0003s0175.1

Vocar.0003s0175.1 (32889074)


Aliases : 32889074

Description : DNA ligase, ATP-dependent, N-terminal; DNA ligase, ATP-dependent, C-terminal; DNA ligase, ATP-dependent, central [Interproscan].


Gene families : OG_01_0000772 (OrthoFinder) Phylogenetic Tree(s): OG0000772_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0003s0175.1
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000754.31 tig00000754_g3915.t2 DNA ligase 1 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre07.g325716 30774592 DNA damage response.DNA repair mechanisms.base excision... 0.03 OrthoFinder
OT_10G00620.1 No alias DNA ligase, ATP-dependent, N-terminal; DNA ligase,... 0.02 OrthoFinder
TP02G10240.1 No alias DNA ligase, ATP-dependent, central; DNA ligase,... 0.01 OrthoFinder
XM_003057675.1 MicpuC2_16166, 16166 DNA ligase, ATP-dependent, central; DNA ligase,... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003910 DNA ligase (ATP) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006281 DNA repair IEA Interproscan
BP GO:0006310 DNA recombination IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006405 RNA export from nucleus IEP Enrichment
BP GO:0006406 mRNA export from nucleus IEP Enrichment
BP GO:0006813 potassium ion transport IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0050657 nucleic acid transport IEP Enrichment
BP GO:0050658 RNA transport IEP Enrichment
BP GO:0051028 mRNA transport IEP Enrichment
BP GO:0051168 nuclear export IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051236 establishment of RNA localization IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
InterPro domains Description Start Stop
IPR012309 DNA_ligase_ATP-dep_C 856 967
IPR012308 DNA_ligase_ATP-dep_N 385 561
IPR012310 DNA_ligase_ATP-dep_cent 628 831
No external refs found!