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  5. Vocar.0002s0599.1

Vocar.0002s0599.1 (32890756)


Aliases : 32890756

Description : Zinc finger, RING-type; E3 ligase, CCCH-type zinc finger; Zinc finger, CCCH-type [Interproscan].


Gene families : OG_01_0002730 (OrthoFinder) Phylogenetic Tree(s): OG0002730_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0002s0599.1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Transcript_contig_55952 55952 Zinc finger, CCCH-type; E3 ligase, CCCH-type zinc finger... 0.01 OrthoFinder
lcl|BLLF01000128.1_cds_GFH07962.1_2439 HaLaN_02851, GFH07962 C3H1-type domain-containing protein 0.02 OrthoFinder
lcl|BLLF01004297.1_cds_GFH29337.1_23814 HaLaN_27979, GFH29337 C3H1-type domain-containing protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004425 indole-3-glycerol-phosphate synthase activity IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0009894 regulation of catabolic process IEP Enrichment
BP GO:0010608 posttranscriptional regulation of gene expression IEP Enrichment
CC GO:0019008 molybdopterin synthase complex IEP Enrichment
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
BP GO:0030259 lipid glycosylation IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
BP GO:0031329 regulation of cellular catabolic process IEP Enrichment
MF GO:0032977 membrane insertase activity IEP Enrichment
BP GO:0043487 regulation of RNA stability IEP Enrichment
BP GO:0043488 regulation of mRNA stability IEP Enrichment
BP GO:0043545 molybdopterin cofactor metabolic process IEP Enrichment
BP GO:0044528 regulation of mitochondrial mRNA stability IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0046912 acyltransferase, acyl groups converted into alkyl on transfer IEP Enrichment
MF GO:0051082 unfolded protein binding IEP Enrichment
BP GO:0051189 prosthetic group metabolic process IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
BP GO:0051260 protein homooligomerization IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0061013 regulation of mRNA catabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
MF GO:0140104 molecular carrier activity IEP Enrichment
MF GO:0140597 protein carrier activity IEP Enrichment
BP GO:1903311 regulation of mRNA metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001841 Znf_RING 426 486
IPR000571 Znf_CCCH 6 28
IPR041367 Znf-CCCH_4 36 55
No external refs found!