1. Home
  2. Species
  3. Volvox carteri
  4. Sequence
  5. Vocar.0002s0545.1

Vocar.0002s0545.1 (32890832)


Aliases : 32890832

Description : Ribosomal protein L13 [Interproscan].


Gene families : OG_01_0000958 (OrthoFinder) Phylogenetic Tree(s): OG0000958_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0002s0545.1
Cluster HCCA: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020912.24 tig00020912_g15798.t1 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre06.g264350 30779581, PRPL13 Protein biosynthesis.organelle translation... 0.15 OrthoFinder
Cre09.g405200 30781496, MRPL13 Protein biosynthesis.organelle translation... 0.03 OrthoFinder
Cz11g15150.t1 No alias Ribosomal protein L13 [Interproscan]. 0.1 OrthoFinder
Dusal.0355s00001.1 33196340 Ribosomal protein L13 [Interproscan]. 0.01 OrthoFinder
EOD32274 No alias Mitochondrial/chloroplast ribosomal protein L13 [Ensembl]. 0.02 OrthoFinder
EOD37780 No alias Mitochondrial/chloroplast ribosomal protein L13 [Ensembl]. 0.02 OrthoFinder
OT_06G01030.1 No alias Ribosomal protein L13 [Interproscan]. 0.08 OrthoFinder
Sro874_g214140.1 Contig589.g7365 Protein L13 0.03 OrthoFinder
SymbC1.scaffold113.80 113.80 Ribosomal protein S9; Ribosomal protein L13 [Interproscan]. 0.01 OrthoFinder
TPCG02710.1 No alias Ribosomal protein L13 [Interproscan]. 0.05 OrthoFinder
XM_002501391.1 MICPUN_97280, 97280 Ribosomal protein L13 [Interproscan]. 0.07 OrthoFinder
XM_003059440.1 MicpuC2_27251, 27251 Ribosomal protein L13 [Interproscan]. 0.07 OrthoFinder
lcl|LHPG02000021.1_cds_PRW20835.1_5043 PRW20835 50S ribosomal chloroplastic 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0004601 peroxidase activity IEP Enrichment
MF GO:0004602 glutathione peroxidase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006720 isoprenoid metabolic process IEP Enrichment
BP GO:0006754 ATP biosynthetic process IEP Enrichment
BP GO:0006778 porphyrin-containing compound metabolic process IEP Enrichment
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Enrichment
BP GO:0006979 response to oxidative stress IEP Enrichment
MF GO:0008171 O-methyltransferase activity IEP Enrichment
BP GO:0008299 isoprenoid biosynthetic process IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009141 nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP Enrichment
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP Enrichment
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP Enrichment
CC GO:0009512 cytochrome b6f complex IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
BP GO:0015985 energy coupled proton transport, down electrochemical gradient IEP Enrichment
BP GO:0015986 ATP synthesis coupled proton transport IEP Enrichment
BP GO:0015994 chlorophyll metabolic process IEP Enrichment
BP GO:0015995 chlorophyll biosynthetic process IEP Enrichment
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0017004 cytochrome complex assembly IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042440 pigment metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity IEP Enrichment
BP GO:0046148 pigment biosynthetic process IEP Enrichment
MF GO:0046406 magnesium protoporphyrin IX methyltransferase activity IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
CC GO:0070069 cytochrome complex IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 76 99
IPR005822 Ribosomal_L13 115 217
No external refs found!