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  5. Vocar.0002s0392.1

Vocar.0002s0392.1 (32891126)


Aliases : 32891126

Description : Histone H2A/H2B/H3 [Interproscan].


Gene families : OG_01_0000102 (OrthoFinder) Phylogenetic Tree(s): OG0000102_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0002s0392.1
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
Cre06.g264900 30779615, HTB13 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g271376 30780144 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g273850 30778673, HTB7 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g274250 30779155 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g275800 30778604 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre06.g276550 30778890, HTB23 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre06.g276900 30779728, HTB24 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre12.g504550 30792324 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre12.g504700 30793271 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre12.g506200 30793175 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre13.g570050 30784307, HTB2 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre13.g590750 30783880, HTB37 Chromatin organisation.histones.H2B-type histone 0.02 OrthoFinder
Cre13.g591200 30784473, HTB38 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g709150 30782749 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g710450 30782433 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g711750 30781954 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cre17.g714050 30782614, HTB21 Chromatin organisation.histones.H2B-type histone 0.03 OrthoFinder
Cz02g02060.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Cz05g04190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Cz07g08190.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
Cz08g27120.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Cz18g11110.t1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
EOD16252 No alias Histone H2A/H2B/H3 [Interproscan]. 0.01 OrthoFinder
EOD17479 No alias Histone H2A/H2B/H3 [Interproscan]. 0.01 OrthoFinder
EOD18484 No alias Histone H2A/H2B/H3 [Interproscan]. 0.01 OrthoFinder
EOD26824 No alias Putative histone H2B [Ensembl]. 0.01 OrthoFinder
EOD41189 No alias Putative histone H2B [Ensembl]. 0.01 OrthoFinder
OT_08G01920.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
PTI_06G02120.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
PTI_06G04930.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
Sro1535_g280540.1 Contig3021.g24091 Histone H2B 0.02 OrthoFinder
Sro1563_g282700.1 Contig1017.g10180 Histone H2B 0.02 OrthoFinder
Sro228_g092710.1 Contig1235.g11585 Histone H2B 0.02 OrthoFinder
Sro470_g149440.1 Contig850.g9338 Histone H2B 0.02 OrthoFinder
TP05G07690.1 No alias Histone H2A/H2B/H3 [Interproscan]. 0.01 OrthoFinder
XM_003055466.1 MicpuC2_13212, 13212 Histone H2B 0.02 OrthoFinder
XM_003058473.1 MicpuC2_58125, 58125 Histone H2A/H2B/H3 [Interproscan]. 0.03 OrthoFinder
XM_003061989.1 MicpuC2_35705, 35705 Histone H2A/H2B/H3 [Interproscan]. 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497740.1_6693 KAA8497740 Histone H2B type 1-M 0.01 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Enrichment
CC GO:0005815 microtubule organizing center IEP Enrichment
BP GO:0007010 cytoskeleton organization IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0034453 microtubule anchoring IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 13 135
No external refs found!