1. Home
  2. Species
  3. Volvox carteri
  4. Sequence
  5. Vocar.0002s0346.1

Vocar.0002s0346.1 (32890766)


Aliases : 32890766

Description : Ribosomal protein S27a; Ubiquitin-like domain [Interproscan].


Gene families : OG_01_0000054 (OrthoFinder) Phylogenetic Tree(s): OG0000054_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Vocar.0002s0346.1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.50 tig00022075_g23611.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.1 OrthoFinder
Cre01.g007051 30788581 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder
Cre06.g273600 30779902, RPS27a Protein biosynthesis.cytosolic ribosome.small subunit... 0.25 OrthoFinder
Cz09g22150.t1 No alias Ribosomal protein S27a [Interproscan]. 0.23 OrthoFinder
Cz13g16210.t1 No alias Ubiquitin-like domain [Interproscan]. 0.11 OrthoFinder
Dusal.0222s00011.1 33201848 Ribosomal protein S27a; Ubiquitin-like domain [Interproscan]. 0.1 OrthoFinder
Dusal.0519s00002.1 33200370 Ubiquitin-like domain [Interproscan]. 0.04 OrthoFinder
EOD24536 No alias Ribosomal protein L41; Ubiquitin-like domain [Interproscan]. 0.1 OrthoFinder
EOD32212 No alias Ubiquitin-like domain; Ribosomal protein S27a [Interproscan]. 0.14 OrthoFinder
EOD34096 No alias Ribosomal protein L41; Ubiquitin-like domain [Interproscan]. 0.1 OrthoFinder
OT_07G00910.1 No alias Ubiquitin-like domain; Ribosomal protein S27a [Interproscan]. 0.1 OrthoFinder
OT_08G01740.1 No alias Ribosomal protein L40e; Ubiquitin-like domain [Interproscan]. 0.14 OrthoFinder
PTI_07G02070.1 No alias Ubiquitin-like domain; Ribosomal protein S27a [Interproscan]. 0.14 OrthoFinder
Sro305_g112730.1 Contig560.g7114 Polyubiquitin (Fragment) 0.23 OrthoFinder
Sro490_g153470.1 Contig328.g4367 Polyubiquitin (Fragment) 0.24 OrthoFinder
TP05G02210.1 No alias Ubiquitin-like domain; Ribosomal protein S27a [Interproscan]. 0.21 OrthoFinder
XM_002501154.1 MICPUN_90428, 90428 Ribosomal protein S27a; Ubiquitin-like domain [Interproscan]. 0.23 OrthoFinder
XM_002503017.1 MICPUN_82590, 82590 Ribosomal protein L40e; Ubiquitin-like domain [Interproscan]. 0.13 OrthoFinder
XM_003058637.1 MicpuC2_17541, 17541 Ribosomal protein L40e; Ubiquitin-like domain [Interproscan]. 0.08 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60289.1_4387 PRW60289 Ubiquitin-40S ribosomal S27a 0.15 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56465.1_9834 PRW56465 Ubiquitin-60S ribosomal L40 0.13 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497057.1_786 KAA8497057 Ubiquitin-like protein 1-40S ribosomal protein S27a 0.08 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493558.1_4320 KAA8493558 Ubiquitin-60S ribosomal protein L40-2 0.14 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Enrichment
CC GO:0000814 ESCRT II complex IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
BP GO:0006486 protein glycosylation IEP Enrichment
MF GO:0008417 fucosyltransferase activity IEP Enrichment
CC GO:0032993 protein-DNA complex IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
BP GO:0043413 macromolecule glycosylation IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
InterPro domains Description Start Stop
IPR000626 Ubiquitin-like_dom 3 71
IPR002906 Ribosomal_S27a 100 143
No external refs found!